dcp.rutgers.edu
DNA-LandscapesDnaCP is DNA conformational parameter database, containing base pair parameters, base-pair step parameters, dihedral angles, groove width, etc.
http://dcp.rutgers.edu/
DnaCP is DNA conformational parameter database, containing base pair parameters, base-pair step parameters, dihedral angles, groove width, etc.
http://dcp.rutgers.edu/
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DNA-Landscapes | dcp.rutgers.edu Reviews
https://dcp.rutgers.edu
DnaCP is DNA conformational parameter database, containing base pair parameters, base-pair step parameters, dihedral angles, groove width, etc.
dcp.rutgers.edu
DNA-Landscapes
http://dcp.rutgers.edu/index.php/doc/tutorial
Thursday, August 18, 2016 03:23. The second option lets the user enter a list of PDB or NDB structural identifiers (IDs), which the server checks for accuracy. This option allows the user to perform searches elsewhere, such as the integrated search at the NDB or the advanced search at the PDB, and then import the findings into the 3DNALandscapes interface for conformational analysis. The user can also modify the list at this point in the search by specifying the relevant PDB ID(s) to be removed or added.
DNA-Landscapes
http://dcp.rutgers.edu/index.php/doc/definition
Thursday, August 18, 2016 03:23. Hydrogen bond XV - YW. A hydrogen bond between XV. Atom of base 1 (on the left, chain 1) and YW. Atom of base 2 (on the right, chain 2). For example, N1 - N3. Of the base pair C-G. Is a hydrogen bond between the N1 atom of base C. And the N3 atom of base G. Length of the hydrogen bond XV - YW. Torsion angle in the five-membered sugar ring: C4'-O4'-C1'-C2'. Torsion angle in the five-membered sugar ring: O4'-C1'-C2'-C3'. See description under parameter P.'. Backbone torsion...
DNA-Landscapes
http://dcp.rutgers.edu/index.php/doc/about
Thursday, August 18, 2016 03:23. 1 Olson, W. K., Lu, X.-J. (2003) 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. Nucleic Acids. Res. 31(17): 5108-5121. 2 Lu X-J. and Olson W.K. (2008) 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three dimensional nucleic-acid structures, Nature Protocols 3(7): 1213-1227. New Brunswick, New Jersey, USA.
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Oxford Journals | Life Sciences | Nucleic Acids Research | Database Summary Paper Alpha List
http://www.oxfordjournals.org/nar/database/a
Database Summary Paper Alpha List. NAR Database Summary Paper Alphabetic List. 1000 Genomes Selection Browser. Engelken, Johannes; Pybus, Marc; Dall'Olio, Giovanni; Luisi, Pierre; Uzkudun, Manu; Carreño-Torres, Angel; Pavlidis, Pavlos; Laayouni, Hafid; Bertranpetit, Jaume. Signature of selection in the human genomes. 16S and 23S Ribosomal RNA Mutation Database. 16S and 23S ribosomal RNA mutations. Proteome database system for microbial research. 3D rRNA modification maps. 3DID - 3D interacting domains.
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DNA-Landscapes
Friday, August 07, 2015 08:23. Welcome to 3DNALandscapes, a database for exploring the conformational features of DNA. For more information about the database, please refer to About. Sections of this website. To get started with querying data, please use the Search. Improvements to the web interface allow users to specify their own choice of structures by inputting the PDB (Protein Data Bank) or NDB (Nucleic Acid Database) identifiers. New Brunswick, New Jersey, USA.
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