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Kappa-Dev technical page

A rule-based language for modeling protein interaction networks. The released version binaries. The development version source code. And (hopefully) nightly-builds binaries. The reference manual of the development version is available here. Are distributed as PDF with the binaries. Jean Krivine teaching page. Provides matierial to start with KaSim. Compiling the simulator and analyzer. Maybe the most valuable place to see how to compile KaSim is our continious integration script. Building a kappa model.

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Kappa-Dev technical page | dev.executableknowledge.org Reviews
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A rule-based language for modeling protein interaction networks. The released version binaries. The development version source code. And (hopefully) nightly-builds binaries. The reference manual of the development version is available here. Are distributed as PDF with the binaries. Jean Krivine teaching page. Provides matierial to start with KaSim. Compiling the simulator and analyzer. Maybe the most valuable place to see how to compile KaSim is our continious integration script. Building a kappa model.
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Kappa-Dev technical page | dev.executableknowledge.org Reviews

https://dev.executableknowledge.org

A rule-based language for modeling protein interaction networks. The released version binaries. The development version source code. And (hopefully) nightly-builds binaries. The reference manual of the development version is available here. Are distributed as PDF with the binaries. Jean Krivine teaching page. Provides matierial to start with KaSim. Compiling the simulator and analyzer. Maybe the most valuable place to see how to compile KaSim is our continious integration script. Building a kappa model.

INTERNAL PAGES

dev.executableknowledge.org dev.executableknowledge.org
1

KaSim in browser

http://dev.executableknowledge.org/try/index.html?&plot_period=.1&time_limit=90&model=https://raw.githubusercontent.com/Kappa-Dev/KaSim/master/models/abc-pert.ka

2

KaSim API

http://dev.executableknowledge.org/docs/KaSim-API-master/index.html

Index of module types. The main entry point of KaSim executable is main/KaSim.ml but let's describe the API bottom-up. The folder dataStructures/ has a transparent name. You can find there:. Array with dynamic size. Our own implementattion of Set and Map. Kappa numbers (either float, int or int64) and operations on them. Stores a bunch of stuff the user gave a name to. Set union of 2 sorted list When l1 is included in l2:. Merge uniq l1 l2 = merge uniq l2 l1 = l2. Graph page title deps header core f.

3

KaSim & KaSa reference manual(release a404ddd)

http://dev.executableknowledge.org/docs/KaSim-manual-master/KaSim_manual.htm

KaSim & KaSa reference manual. Pierre Boutillier, J. Me Feret, Jean Krivine. Corresponding author: jean.krivine@irif.fr. 21 Using precompiled binaries. 22 Obtaining the sources. 24 Compilation of KaSa graphical interface. 3 The kappa language. 32 Agent and token signatures. 33 Sited-graph pattern: Kappa expression. 341 Chemical notation rules. 342 Edit notation rules. 4 The command line. 5 A simple model. 611 Adding or deleting agents during a simulation. 614 Changing the value of a token. The latest imp...

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A rule-based language for modeling protein interaction networks. The released version binaries. The development version source code. And (hopefully) nightly-builds binaries. The reference manual of the development version is available here. Are distributed as PDF with the binaries. Jean Krivine teaching page. Provides matierial to start with KaSim. Compiling the simulator and analyzer. Maybe the most valuable place to see how to compile KaSim is our continious integration script. Building a kappa model.

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