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Gramene

Ensembl Plants is a genome-centric portal for plant species of scientific interest

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Gramene | dev.gramene.org Reviews
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Ensembl Plants is a genome-centric portal for plant species of scientific interest
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1 Ensembl
2 Ensembl Genomes
3 genome
4 genome browser
5 comparative genomics
6 variation
7 SNPs
8 EST
9 mRNA
10 rna-Seq
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gramene,loading…,blast,biomart,tools,downloads,feedback,more ▼,search terms,search all species,search ensembl genomes,search vega,search ebi,search sanger,all species,arabidopsis thaliana,oryza sativa japonica,triticum aestivum,hordeum vulgare,zea mays
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Gramene | dev.gramene.org Reviews

https://dev.gramene.org

Ensembl Plants is a genome-centric portal for plant species of scientific interest

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1

Ensembl Genomes: Zea mays - Details

http://dev.gramene.org/Zea_mays/Info/Annotation

Zea mays Assembly and Gene Annotation. Maize) has the highest world-wide production of all grain crops, yielding 875 million tonnes in 2012 ( http:/ faostat.fao.org/. 2009) Maize is distinguished from other grasses in that its genome arose from an ancient tetraploidy event unique to its lineage. The complete genome sequence of. Cv B73 (RefGen v1) was published in 2009 by the NSF-funded Maize Genome Sequencing Project (Schnable. 2009; Wei, Zhang. In addition to the familiar "Gramene Gene" annotation track...

2

Medicago truncatula str. A17 - Ensembl Genomes

http://dev.gramene.org/Medicago_truncatula

Medicago truncatula (MedtrA17 4.0). Medicago truncatula str. A17. What's New in Medicago truncatula release 84. Barrel Medic) is a small annual legume native to the Mediterranean region. As other legumes, it forms symbioses with nitrogen-fixing rhizobia and arbuscular mycorrhizal fungi. Is a close relative of alfalfa (. A widely cultivated crop with limited genomics tools and complex autotetraploid genetics. As such, the. More information and statistics. Genome assembly: MedtrA17 4.0. What can I find?

3

Ensembl Genomes: Oryza sativa Japonica Group - BLAST search

http://dev.gramene.org/genome_browser/Tools/Blast?db=core

Gramene is produced in collaboration with Ensembl Plants. Gramene release 50 - Apr 2016 EBI. Maize B73 RefGen v4 PreRelease Browser.

4

Ensembl Genomes: Hordeum vulgare - Details

http://dev.gramene.org/Hordeum_vulgare/Info/Annotation

Hordeum vulgare Assembly and Gene Annotation. The barley genome assembly in Ensembl Plants is version 082214v1. This is a gene-space assembly of. Generated by the International Barley Genome Sequencing Consortium. With contigs ordered into chromosomal pseudomolecules using POPSEQ data from Ariyadasa et al. And Mascher et al. The gene models are provided by the PGSB. Group at the German Research Centre for Environmental Health. Funded by the Biotechnology and Biological Sciences Research Council. In the E...

5

Ensembl Genomes: Oryza sativa Japonica Group - Not Available - Personal Data

http://dev.gramene.org/Account/Favourites/Reset

Track Hub Registry Search. Configurations for this page. Sorry, you have entered an invalid URL. Please select a link from the top of the page. If you think this is an error, or you have any questions, please contact our HelpDesk team.

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Medicago truncatula str. A17. For easy access to commonly used genomes, drag from the bottom list to the top one · Save. Oryza sativa Japonica (. Oryza sativa Japonica Group. Arabidopsis lyrata subsp. lyrata. Brassica oleracea var. oleracea. Brassica rapa subsp. pekinensis. Cyanidioschyzon merolae strain 10D. Medicago truncatula str. A17 (. Medicago truncatula str. A17. Musa acuminata subsp. malaccensis. Oryza sativa Indica (. Oryza sativa Indica Group. Middot; Restore default list. Select a species -.

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