dna.cs.byu.edu

CSL

The Computational Science Laboratory investigates new algorithms for solving problems in computational biology, computational chemistry and computational physics. Emphasis is placed on finding efficient algorithms that can be run on parallel computers. The Laboratory currently uses computational resources from the Fulton Supercomputing Center. As well as 600-800 idle desktop nodes across the BYU campus that are managed by the DOGMA. Maps reads from next-generation sequencers to genomic data. The laborato...

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The Computational Science Laboratory investigates new algorithms for solving problems in computational biology, computational chemistry and computational physics. Emphasis is placed on finding efficient algorithms that can be run on parallel computers. The Laboratory currently uses computational resources from the Fulton Supercomputing Center. As well as 600-800 idle desktop nodes across the BYU campus that are managed by the DOGMA. Maps reads from next-generation sequencers to genomic data. The laborato...

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2 computer science department

3 projects

4 airnet

5 gnumap

6 pathgen

7 promatch

8 psoda

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10 papers

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CSL | dna.cs.byu.edu Reviews

https://dna.cs.byu.edu

The Computational Science Laboratory investigates new algorithms for solving problems in computational biology, computational chemistry and computational physics. Emphasis is placed on finding efficient algorithms that can be run on parallel computers. The Laboratory currently uses computational resources from the Fulton Supercomputing Center. As well as 600-800 idle desktop nodes across the BYU campus that are managed by the DOGMA. Maps reads from next-generation sequencers to genomic data. The laborato...

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dna.cs.byu.edu

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CSL - Papers and Technical Reports

http://dna.cs.byu.edu/papers

Provo, UT 84602-6576. Pathoscope: Species identification and strain attribution with unassembled sequencing data, Owen E. Francis, Matthew Bendall, Solaiappan Manimaran, Changjin Hong, Nathan L. Clement, Eduardo Castro-Nallar, Quinn Snell, G. Bruce Schaalje, Mark J. Clement, Keith A. Crandall, W. Evan Johnson, Genome Research 01/2013; DOI:10.1101/gr.150151.112. ScaffoldScaffolder: An Aggressive Scaffold Finishing Algorithm, Paul M. Bodily, Jared C. Price, Mark J. Clement, Quinn Snell, Proceed...Denovo Id...

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Dogma

http://dna.cs.byu.edu/dogma

This document contains information regarding how to setup and use DOGMA3. It is not meant as an all encompassing tutorial or is by any means meant to be the only documentation on the system. Further documentation is being written and will be available at the DOGMA Wiki. DOGMA is an opensource project that aims to allow easy use of idle machines for distributed computing. It was created and is maintained by the Computational Science Lab. We would also like to thank the Apache Foundation. Once JBoss is ins...

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Genomic Next-generation Universal MAPper (gnumap)

http://dna.cs.byu.edu/gnumap

Skip to: page content. Links on this page. Genomic Next-generation Universal MAPper (gnumap). The Genomic Next-generation Universal MAPper. Is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. Was able to more accurately account for these duplicate regions. GNUMAP Users Google Group. Download the software from here. Or visit the new Johnson Lab Home Page. And the presentation is availab...

4

Welcome to Adobe GoLive 5

http://dna.cs.byu.edu/proposal.html

Summary of Whiting et al. NSF award #0120718 "BIOCOMPLEXITY: Hexapod Phylogenomics - Bringing Phylogenetic Supercomputing to the Masses". PI: Michael Whiting; Co-PI's: Keith Crandall, Quinn Snell, Mark Clement (Computer Science), and David Whiting (Statistics). 1,340,000 over 5 years, beginning January 1, 2002. Sample of Reviewer Comments. Last Updated: 28 November 2001.

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csl.cs.byu.edu

Genomic Next-generation Universal MAPper (gnumap)

http://csl.cs.byu.edu/gnumap

Skip to: page content. Links on this page. Genomic Next-generation Universal MAPper (gnumap). The Genomic Next-generation Universal MAPper. Is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. Was able to more accurately account for these duplicate regions. GNUMAP Users Google Group. Download the software from here. Or visit the new Johnson Lab Home Page. And the presentation is availab...

raspberrygenome.org

Genomic Next-generation Universal MAPper (gnumap)

http://www.raspberrygenome.org/gnumap

Skip to: page content. Links on this page. Genomic Next-generation Universal MAPper (gnumap). The Genomic Next-generation Universal MAPper. Is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. Was able to more accurately account for these duplicate regions. GNUMAP Users Google Group. Download the software from here. Or visit the new Johnson Lab Home Page. And the presentation is availab...

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The Computational Science Laboratory investigates new algorithms for solving problems in computational biology, computational chemistry and computational physics. Emphasis is placed on finding efficient algorithms that can be run on parallel computers. The Laboratory currently uses computational resources from the Fulton Supercomputing Center. As well as 600-800 idle desktop nodes across the BYU campus that are managed by the DOGMA. Maps reads from next-generation sequencers to genomic data. The laborato...

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