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MyGene.info documentation — MyGene.info 2.0 documentation

Try it live on interactive API page. Migration from v1 API. Boolean operators and grouping. Batch queries via POST. Batch queries via POST. Call from web applications. Calling services from server-side. Making AJAX calls from client-side. Making your own server-side proxy. Cross-origin http request through CORS. Example 1: using CGI. Example 2: using tornado. Example 3: using JSONP. Example 4: using CORS. Autocomplete widget for gene query. Try it live first. Use it in your website. Provides two simple w...

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MyGene.info documentation — MyGene.info 2.0 documentation | docs.mygene.info Reviews

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Try it live on interactive API page. Migration from v1 API. Boolean operators and grouping. Batch queries via POST. Batch queries via POST. Call from web applications. Calling services from server-side. Making AJAX calls from client-side. Making your own server-side proxy. Cross-origin http request through CORS. Example 1: using CGI. Example 2: using tornado. Example 3: using JSONP. Example 4: using CORS. Autocomplete widget for gene query. Try it live first. Use it in your website. Provides two simple w...

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2 gene query service

3 url change

4 returned objects

5 gene annotation service

6 gene annotation data

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9 species

10 genome assemblies

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MyGene.info documentation — MyGene.info 2.0 documentation | docs.mygene.info Reviews

https://docs.mygene.info

Try it live on interactive API page. Migration from v1 API. Boolean operators and grouping. Batch queries via POST. Batch queries via POST. Call from web applications. Calling services from server-side. Making AJAX calls from client-side. Making your own server-side proxy. Cross-origin http request through CORS. Example 1: using CGI. Example 2: using tornado. Example 3: using JSONP. Example 4: using CORS. Autocomplete widget for gene query. Try it live first. Use it in your website. Provides two simple w...

INTERNAL PAGES

docs.mygene.info

1

Gene annotation service — MyGene.info 3.0 documentation

http://docs.mygene.info/en/latest/doc/annotation_service.html

Try it live on interactive API page. Migration from v2 API. Batch queries via POST. This page describes the reference for MyGene.info gene annotation web service. It’s also recommended to try it live on our interactive API page. To obtain the gene annotation via our web service is as simple as calling this URL:. Http:/ mygene.info/v3/gene/ geneid. For an example and here. For more details. If the input geneid. Is not valid, 404 (NOT FOUND) will be returned. But a “. Just like gene query service. Optional...

2

Usage and Demo — MyGene.info 3.0 documentation

http://docs.mygene.info/en/latest/doc/usage_demo.html

Try it live on interactive API page. Migration from v2 API. Call from web applications. Calling services from server-side. Making AJAX calls from client-side. Making your own server-side proxy. Cross-origin http request through CORS. Example 1: using CGI. Example 2: using tornado. Example 3: using JSONP. Example 4: using CORS. Autocomplete widget for gene query. Try it live first. Use it in your website. This page provides some usage examples and demo applications. Call from web applications. Because our...

3

Gene annotation data — MyGene.info 3.0 documentation

http://docs.mygene.info/en/latest/doc/data.html

Try it live on interactive API page. Migration from v2 API. We currently obtain the gene annotation data from several public data resources and keep them up-to-date, so that you don’t have to do it:. Whenever a new release is available. Are not included at the moment. Whenever a new release is available. Whenever a new release is available. Whenever a new release is available. Whenever a new release is available. For “exons” field. Whenever a new release is available. For “pathway” field. We import genom...

4

Third-party packages — MyGene.info 3.0 documentation

http://docs.mygene.info/en/latest/doc/packages.html

Try it live on interactive API page. Migration from v2 API. Another MyGene Python wrapper. This page lists third-party packages/modules built upon MyGene.info. 8221; is an easy-to-use Python wrapper to access MyGene.info. You can install it easily using either pip. Pip install mygene #this is preferred. This is a brief example:. See https:/ pypi.python.org/pypi/mygene. This autocomplete widget for gene query (built upon JQueryUI’s autocomplete widget. You can also play with this jsFiddle. On Read the Docs.

5

Gene query service — MyGene.info 3.0 documentation

http://docs.mygene.info/en/latest/doc/query_service.html

Try it live on interactive API page. Migration from v2 API. Boolean operators and grouping. Batch queries via POST. This page describes the reference for MyGene.info gene query web service. It’s also recommended to try it live on our interactive API page. Required, passing user query. The detailed query syntax for parameter “ q. 8221; we explained below. Optional, the maximum number of matching gene hits to return (with a cap of 1000 at the moment). Default: 10. The combination of “ size. Optional, the c...

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sync_sulab - Page 1 - MyGene.info

http://www.mygene.info/tag/sync_sulab

Tag archive: sync sulab (12). Functional gene constraint scores from ExAC now available from MyGene.info. With the publication of a new paper in Nature, the Exome Aggregation Consortium (ExAC) has received some much deserved a…. New release: MyGene.info Python client updated to v3.0.0. A few weeks ago, we released MyGene.info v3 API, which brings changes to exon field data structure and added accession v…. MyGene.info v3 API is out! We're proud to announce the next version of MyGene.info! Page 1 of 3.

mygene.info

genome - MyGene.info

http://www.mygene.info/tag/genome-2

Tag archive: genome (1). MyGene.info added mm9 support for mouse genes. The default genomic locations of mouse genes from MyGene.info are always based on the current genome assembly of GRCm38…. Page 1 of 1.

mygene.info

mygene.info - Page 1 - MyGene.info

http://www.mygene.info/tag/mygene-info

Tag archive: mygene.info (10). Functional gene constraint scores from ExAC now available from MyGene.info. With the publication of a new paper in Nature, the Exome Aggregation Consortium (ExAC) has received some much deserved a…. New release: MyGene.info Python client updated to v3.0.0. A few weeks ago, we released MyGene.info v3 API, which brings changes to exon field data structure and added accession v…. MyGene.info v3 API is out! We're proud to announce the next version of MyGene.info! Page 1 of 3.

mygene.info

assembly - Page 1 - MyGene.info

http://www.mygene.info/tag/assembly

Tag archive: assembly (2). MyGene.info added mm9 support for mouse genes. The default genomic locations of mouse genes from MyGene.info are always based on the current genome assembly of GRCm38…. MyGene.info moved to GRCh38/hg38 for human genes with hg19 still supported. GRCh38 (or hg38) is the latest human genome assembly, which was released almost a year ago. MyGene.info is now moved to…. Page 1 of 1.

mygene.info

MyGene.info added mm9 support for mouse genes

http://www.mygene.info/mygene-info-added-mm9-support-for-mouse-genes

MyGene.info added mm9 support for mouse genes. Dec, 09, 2014. The default genomic locations of mouse genes from MyGene.info. Are always based on the current genome assembly of GRCm38. Or mm10). Although mm10 has been released in early 2012, there are still needs today. To query gene annotations based on GRCm37 (or mm9), the previous mouse genome assembly, in order to handle some legacy data. Just like what we did for human genes a while ago, supporting hg19 while upgrading to hg38. Q=mm9chr12:57795963-57...

mygene.info

funding - Page 1 - MyGene.info

http://www.mygene.info/tag/funding

Tag archive: funding (2). We need your support to improve. With the release of our recent paper in Genome Biology (DOI: 10.1186/s13059-016-0953-9), we've had the opportunity to sh…. NIH/BD2K grant awarded to further develop MyGene.info and MyVariant.info. The proposal to develop MyGene.info and MyVariant.info into to a community-knowledge aggregation platform has been funde…. Page 1 of 1.

mygene.info

myvariant.info - Page 1 - MyGene.info

http://www.mygene.info/tag/myvariant-info

Tag archive: myvariant.info (3). We need your support to improve. With the release of our recent paper in Genome Biology (DOI: 10.1186/s13059-016-0953-9), we've had the opportunity to sh…. NIH/BD2K grant awarded to further develop MyGene.info and MyVariant.info. The proposal to develop MyGene.info and MyVariant.info into to a community-knowledge aggregation platform has been funde…. MyVariant.info to be presented at HGVS. Page 1 of 1.

mygene.info

mouse - MyGene.info

http://www.mygene.info/tag/mouse

Tag archive: mouse (1). MyGene.info added mm9 support for mouse genes. The default genomic locations of mouse genes from MyGene.info are always based on the current genome assembly of GRCm38…. Page 1 of 1.

mygene.info

api - Page 1 - MyGene.info

http://www.mygene.info/tag/api

Tag archive: api (3). MyGene.info v3 API is out! We're proud to announce the next version of MyGene.info! This 3rd version brings new features, fixes some issues, and ca…. MyGene.info API supports SSL now, so works in your https webapp. You requested, and we implemented. Now you can use MyGene.info API via both http and https protocols (read more about h…. New API for species data. Page 1 of 1.

mygene.info

ssl - MyGene.info

http://www.mygene.info/tag/ssl

Tag archive: ssl (1). MyGene.info API supports SSL now, so works in your https webapp. You requested, and we implemented. Now you can use MyGene.info API via both http and https protocols (read more about h…. Page 1 of 1.

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MyGene.info documentation — MyGene.info 2.0 documentation

Try it live on interactive API page. Migration from v1 API. Boolean operators and grouping. Batch queries via POST. Batch queries via POST. Call from web applications. Calling services from server-side. Making AJAX calls from client-side. Making your own server-side proxy. Cross-origin http request through CORS. Example 1: using CGI. Example 2: using tornado. Example 3: using JSONP. Example 4: using CORS. Autocomplete widget for gene query. Try it live first. Use it in your website. Provides two simple w...

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