epidb.animalgenome.org

EpiDB—Home

Expression Data for Download. Downloaded from NCBI SRA (Nov 6, 2015). Provide gene and epigenetics expression data useful for dissecting quantitative trait data in livestock. Future work will provide. Data tracks for these information sources and will ID tissue specific regulation information that is helpful in dissecting QTL. Note: Only data that has tissue information and sequence generated by Illumina chemistry are being utilized. 1: Querying of the meta data database to facilitate data re-use.

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EpiDB—Home | epidb.animalgenome.org Reviews

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Expression Data for Download. Downloaded from NCBI SRA (Nov 6, 2015). Provide gene and epigenetics expression data useful for dissecting quantitative trait data in livestock. Future work will provide. Data tracks for these information sources and will ID tissue specific regulation information that is helpful in dissecting QTL. Note: Only data that has tissue information and sequence generated by Illumina chemistry are being utilized. 1: Querying of the meta data database to facilitate data re-use.

<META> KEYWORDS

1 epidb

2 data

3 expression atlas

4 information

5 epidb objective

6 functions currently available

7 future development

8 video tutorials

9 coming soon

10 epidb version

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epidb,data,expression atlas,information,epidb objective,functions currently available,future development,video tutorials,coming soon,epidb version,data available,elyn fritz waters,email ercfrtz@iastate edu,current collaborators,james koltes,james reecy

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EpiDB—Home | epidb.animalgenome.org Reviews

https://epidb.animalgenome.org

Expression Data for Download. Downloaded from NCBI SRA (Nov 6, 2015). Provide gene and epigenetics expression data useful for dissecting quantitative trait data in livestock. Future work will provide. Data tracks for these information sources and will ID tissue specific regulation information that is helpful in dissecting QTL. Note: Only data that has tissue information and sequence generated by Illumina chemistry are being utilized. 1: Querying of the meta data database to facilitate data re-use.

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epidb.animalgenome.org

1

EpiDB—Gene Expression

http://epidb.animalgenome.org/gene_expression.php

Expression Data for Download. Downloaded from NCBI SRA (July 8, 2016). Ensembl Gene ID, Gene Name, Gene Symbol. Available graphs are created using the code available at Highcharts. www.highcharts.com. This website runs on Bootstrap. The EpiDB is a database designed to host epigenetics data and is the project of Dr. James Koltes. Acknowledgements: This work is funded by a NIFA Post-Doctoral Fellowship.

2

EpiDB—Rsem Expression

http://epidb.animalgenome.org/rsem_expression.php

Expression Data for Download. Downloaded from NCBI SRA (July 8, 2016). The reported values are the TPM values calculated by the RSEM software. You can read more about it here. Also the raw counts produced by the HTSeq software. You can find out more here. Adipose.expression.txt.tar.gz. Adrenal gland.expression.txt.tar.gz. Alveolar macrophage.expression.txt.tar.gz. Ampula.expression.txt.tar.gz. Aortaexpression.txt.tar.gz. Bladder.expression.txt.tar.gz. Blastocyst.expression.txt.tar.gz. Longissimus thoraci...

3

EpiDB—Home

http://epidb.animalgenome.org/index.php

Expression Data for Download. Downloaded from NCBI SRA (July 8, 2016). Provide gene and epigenetics expression data useful for dissecting quantitative trait data in livestock. Future work will provide. Data tracks for these information sources and will ID tissue specific regulation information that is helpful in dissecting QTL. Note: Only data that has tissue information and sequence generated by Illumina chemistry are being utilized. 1: Querying of the meta data database to facilitate data re-use.

4

EpiDB—Data

http://epidb.animalgenome.org/data.php

Expression Data for Download. Downloaded from NCBI SRA (July 8, 2016). There have been 1951 RNAseq datasets, 18 methylation datasets, 402 miRNA datasets, and 23 ChIPseq datasets loaded into the database, spanning 106 tissues. There have been 540 RNAseq datasets, 96 methylation datasets, 26 miRNA datasets, and 25 ChIPseq datasets loaded into the database, spanning 23 tissues. This website runs on Bootstrap. The EpiDB is a database designed to host epigenetics data and is the project of Dr. James Koltes.

5

EpiDB—Suggestions

http://epidb.animalgenome.org/suggestions.php

Expression Data for Download. Downloaded from NCBI SRA (July 8, 2016). This website runs on Bootstrap. The EpiDB is a database designed to host epigenetics data and is the project of Dr. James Koltes. Acknowledgements: This work is funded by a NIFA Post-Doctoral Fellowship.

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aaa.animalgenome.org

NAGRP Bioinfo - What's New

http://aaa.animalgenome.org/news

What's New on the NAGRP Animal Genome Web Site. New, modified, or content updated pages in the last 30 days. Aug 04, 2016 (13:55): http:/ www.animalgenome.org/blast. Aug 03, 2016 (12:08): http:/ www.animalgenome.org/VCmap/index. Aug 03, 2016 (04:05): http:/ www.animalgenome.org/./angenmap/hmail/subject. Aug 03, 2016 (04:05): http:/ www.animalgenome.org/./angenmap/hmail/thread. Aug 03, 2016 (04:05): http:/ www.animalgenome.org/./angenmap/hmail/author. Jul 07, 2016 (09:41): http:/ www.animalgenome....Jul 0...

animalgenome.org

NAGRP Bioinfo - What's New

http://www.animalgenome.org/news

What's New on the NAGRP Animal Genome Web Site. New, modified, or content updated pages in the last 30 days. Red number in parenthesis indicates multiple updates in the area represented by that URL [Aug 19, 2016 (14:01PM CDT)]. Major updates / permanent additions:. File formate examples are being added to the " Minimum information required for Animal QTLdb data entry. Page in the form of Excel work sheets. Click the. Update, May 26, 2016. What's new on the NAGRP animal genome web site. New, Apr 30, 2016.

aaa.animalgenome.org

NAGRP Bioinfo Services

http://aaa.animalgenome.org/bioinfo/services

Discover gene connectivities using gene expression data from the NCBI GEO repository. A cattle gene data set from weighted correlation network analysis to calculate similarity between gene expression values based on "Topological Overlap Measure (TOM)". Feb 10, 2016 - Online. Feb 23, 2016. Web tools, Data repository. Hamid Beiki, James Reecy, Iowa State University. Development of an EpiDB. Aims at providing gene and epigenetics expression data useful for dissecting quantitative trait data in livestock.

animalgenome.org

NAGRP Bioinfo Services

http://www.animalgenome.org/bioinfo/services

Discover gene connectivities using gene expression data from the NCBI GEO repository. A cattle gene data set from weighted correlation network analysis to calculate similarity between gene expression values based on "Topological Overlap Measure (TOM)". Feb 10, 2016 - Online. Feb 23, 2016. Web tools, Data repository. Hamid Beiki, James Reecy, Iowa State University. Development of an EpiDB. Aims at providing gene and epigenetics expression data useful for dissecting quantitative trait data in livestock.

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epidb.animalgenome.org

EpiDB—Home

Expression Data for Download. Downloaded from NCBI SRA (Nov 6, 2015). Provide gene and epigenetics expression data useful for dissecting quantitative trait data in livestock. Future work will provide. Data tracks for these information sources and will ID tissue specific regulation information that is helpful in dissecting QTL. Note: Only data that has tissue information and sequence generated by Illumina chemistry are being utilized. 1: Querying of the meta data database to facilitate data re-use.

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