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Comparative genomics of membrane proteins in tropical parasites and their hosts

Comparative genomics of membrane proteins in tropical parasites and their hosts

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Comparative genomics of membrane proteins in tropical parasites and their hosts | genomics.unibe.ch Reviews
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Comparative genomics of membrane proteins in tropical parasites and their hosts
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KEYWORDS
1 Prediction
2 GPI Anchored
3 GC Map
4 Local Alignment
5 Matrix
6 Protein Families
7 Z Curve
8 Neural Network
9 Kohonen Network
10 Self Organizing Map
CONTENT
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reptile,protein repeat finder,neuralnet gpi anchored,protein identification,reducetothemax,dora,transmembrane domain ploter,niklaus fankhauser,and pascal maeser
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Comparative genomics of membrane proteins in tropical parasites and their hosts | genomics.unibe.ch Reviews

https://genomics.unibe.ch

Comparative genomics of membrane proteins in tropical parasites and their hosts

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1

Database of repetitive antigens

http://genomics.unibe.ch/dora

Database of repetitive antigens. Database of repetitive antigens. Fankhauser, Nguyen-Ha, Adler and Mäser. Mucilaginibacter paludis DSM 18603. Pyrenophora teres f. teres. Bacillus cereus ATCC 10987. Bacteroides fragilis ATCC 25285. Buchnera aphidicola Acyrthosiphon pisum. Leptospira interrogans copenhageni Icterohaemorrha. Mycobacterium tuberculosis ATCC 25618. Prochlorococcus marinus CCMP 1375. Rhodopseudomonas palustris ATCC BAA-98. Salmonella typhi ATCC 700931. Staphylococcus epidermidis ATCC 12228.

2

Membrane Protein Plotter (memProtPlot)

http://genomics.unibe.ch/memplot.html

Create plots of transmembrane proteins. Please upload a file containing. One protein sequence in FASTA format:. Name on first line, after the " " symbol. The strength of this program. Small inner or outer loops of transmembrane proteins. As well as the transmembrane domains themselves. Some transporters have short outer loops,. Which are of biological interest. The TM prediction is done by Phobius. Hava a look at an example. Nick Fankhauser, June 2007.

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