BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. Welcome to the Gypsy Database. From The Gypsy Database. Retrieved from " http:/ gydb.uv.es/index.php/Main Page. Terms of use and policy.
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Gypsy Database 2.0 | gydb.uv.es Reviews
https://gydb.uv.es
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. Welcome to the Gypsy Database. From The Gypsy Database. Retrieved from " http:/ gydb.uv.es/index.php/Main Page. Terms of use and policy.
gydb.uv.es
Gypsy Database 2.0
http://gydb.uv.es/index.php/GINA
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Is a recently described pool of exon-intron transposons ( Marin 2010. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. At its C-terminus. GINA. Like transposons ( Bao et al.
Gypsy Database 2.0
http://gydb.uv.es/index.php/Retroelements
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Tyrosine recombinase (YR) retroelements. Retroelements (retrotransposons and retroviruses) can currently be divided into four systems or groups commonly known as the long terminal repeat (LTR) retroelements. Eickbush and Jamburuthugoda 2008. Genes, and env. On the basis of their mol...
Gypsy Database 2.0
http://gydb.uv.es/index.php/Ty1/Copia
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Evolutionary history and in-progress taxonomy. Depicts one of the most important and representative families of LTR retroelements in eukaryotes (see also, Eickbush and Malik 2002. The abundant representation of Ty1/Copia. Family it is now known that several Ty1/Copia. A Primer Bindi...
Gypsy Database 2.0
http://gydb.uv.es/index.php/LTR_retroelements
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. And other non-autonomous retroelements evolved from LTR retroelements. We additionally consider caulimoviruses of plants within the system of autonomous LTR retroelements because of their common evolutionary relationship with them based on the gag-pol region. The internal region con...
Gypsy Database 2.0
http://gydb.uv.es/index.php/GINGER1
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. From The Gypsy Database. Gypsy-Integrase-Related Type 1 ( GINGER1. Is a recently described pool of exon-intron transposons ( Bao et al. Which encode for a transposase (TR) showing the occurrence of a GPY/F module ( Malik and Eickbush 1999. Thought to mediate multimerization ( Ebina et al. Elements. Base...
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The Mobilome: Selfish DNA: Östergren
http://mobilome.blogspot.com/2009/10/selfish-dna-ostergren.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Monday, October 5, 2009. The lack of posts lately has been due to several things: lab work, laziness, having to input and organize my collection of literature into a new program, and trying to find certain references so I can do my Selfish DNA posts in the (almost) correct chronological order. The labwork remains, as always, the laziness has subsided somewhat, all of the literature I've read has been inputted into Mendeley. He also makes the cr...
The Mobilome: Interesting Elements # 2: MINE, WEIRD and MGL
http://mobilome.blogspot.com/2009/11/interesting-elements-2-mine-weird-and.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Tuesday, November 3, 2009. Interesting Elements # 2: MINE, WEIRD and MGL. Figure 1. Sizes are relative and not to scale. UTR-untranslated region; APE-apurinic/apyrimidinic endonuclease;RT-reverse transcriptase; RNH-RNase H. This weeks entry deals with several inter-related retrotransposons from the rice blast fungus Magnaporthe grisea. Two SINEs (Short Interspersed Elements) from M. grisea. So far this story isn't too weird(. 2005) MINE consist...
The Mobilome: RAG1: Viral or TE?
http://mobilome.blogspot.com/2009/06/rag1-viral-or-te.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Monday, June 22, 2009. RAG1: Viral or TE? Within the so-called “RAG core”, were found to be significantly similar to the Transib. As well, the ITRs of Transib. Elements are very similar to the RSS’s (with a probability of the similarity occurring by chance of 1.0 x 10. Elements generate 5 bp target site duplications (TSD). It seemed like the origin of RAG1. Had been at least partially solved. And that when the virus excises from host DNA it for...
The Mobilome: Selfish DNA: Dawkins
http://mobilome.blogspot.com/2009/07/selfish-dna-dawkins.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Sunday, July 12, 2009. The origins of the selfish DNA hypothesis, later elaborated by Orgel. And Crick and Doolittle and Sapienza. 1980; both to be covered in a future post), reside in one of the more popular books written by Richard Dawkins. For those who haven't read it the book is essentially Dawkins. Treatise on how he feels the sole units of evolution are genes and most of everything else is just an extrapolation. Group I Intron Database.
The Mobilome: Book Review: Mobile DNA Finding Treasure in Junk, Kazazian 2011
http://mobilome.blogspot.com/2011/06/book-review-mobile-dna-finding-treasure.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Friday, June 24, 2011. Book Review: Mobile DNA Finding Treasure in Junk, Kazazian 2011. What has shaken me from my blog post-less slumber? A number of months ago I heard somewhere that a new TE book was going to be coming out, which is a rare event and welcome since the number of TE-related books is quite small. I decided more or less on the spot that I would review it on the blog when I finished reading it. In conclusion, not a great book if y...
The Mobilome: June 2011
http://mobilome.blogspot.com/2011_06_01_archive.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Friday, June 24, 2011. Book Review: Mobile DNA Finding Treasure in Junk, Kazazian 2011. What has shaken me from my blog post-less slumber? A number of months ago I heard somewhere that a new TE book was going to be coming out, which is a rare event and welcome since the number of TE-related books is quite small. I decided more or less on the spot that I would review it on the blog when I finished reading it. In conclusion, not a great book if y...
The Mobilome: October 2009
http://mobilome.blogspot.com/2009_10_01_archive.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Monday, October 5, 2009. The lack of posts lately has been due to several things: lab work, laziness, having to input and organize my collection of literature into a new program, and trying to find certain references so I can do my Selfish DNA posts in the (almost) correct chronological order. The labwork remains, as always, the laziness has subsided somewhat, all of the literature I've read has been inputted into Mendeley. He also makes the cr...
The Mobilome: July 2009
http://mobilome.blogspot.com/2009_07_01_archive.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Tuesday, July 21, 2009. Interesting Elements #1: Cassandra. This will be the first. Of hopefully many blogposts where I will focus on one of the more interesting examples of a TE or other parasitic nucleic acid. This will mainly be my outlet to showcase how diverse mobile DNA is and spread the word about weird, interesting or obscure selfish elements which I find in the literature. To escape suppression by the host genome. The authors hypothesi...
The Mobilome: TEs and Macroevolution
http://mobilome.blogspot.com/2009/06/tes-and-macroevolution.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Friday, June 12, 2009. I'm going to discuss two papers that were recently released electronically by the journal BioEssays, both having to do with TEs and macroevolution. The first, by Oliver and Greene (2009), came to my attention last month when I read a horrible press release. 1) TEs become active during stressful events such as the colonization of new habitats or climate change etc. These are both important papers in the sense that they are...
The Mobilome: June 2009
http://mobilome.blogspot.com/2009_06_01_archive.html
A blog about TEs (and other parasitic nucleic acids) by T.E. Monday, June 22, 2009. RAG1: Viral or TE? Within the so-called “RAG core”, were found to be significantly similar to the Transib. As well, the ITRs of Transib. Elements are very similar to the RSS’s (with a probability of the similarity occurring by chance of 1.0 x 10. Elements generate 5 bp target site duplications (TSD). It seemed like the origin of RAG1. Had been at least partially solved. And that when the virus excises from host DNA it for...
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Gypsy Database 2.0
GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. Welcome to the Gypsy Database. From The Gypsy Database. Retrieved from " http:/ www.gydb.org/index.php/Main Page. Terms of use and policy.
Gypsy Database 2.0
BLAST and HMM servers are currently under maintenance. GIN/GINGER TRs and INTs. Clan AA Ref. DB. Cores Seq. DB. Genome Seq. DB. LTRs and TIRs Seq. DB. Mobile Group II introns DB. Tree of Life Project. Welcome to the Gypsy Database. From The Gypsy Database. Retrieved from " http:/ gydb.uv.es/index.php/Main Page. Terms of use and policy.
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