genome.plantregulome.org
UCSC Genome Browser: News Archives
http://genome.plantregulome.org/goldenPath/newsarch.html
19 December 2014 - New Cow (bosTau8) Assembly Now Available in the Genome Browser. We are pleased to announce the release of a Genome Browser for the June 2014 assembly of cow, Bos taurus. Bos taurus UMD 3.1.1, UCSC version bosTau8). This updated cow assembly was provided by the UMD Center for Bioinformatics and Computational Biology. Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server. Page These data have specific conditions for use. Dm6) browser annotatio...
jogamp.org
JOGL - Java Binding for the OpenGL API
http://jogamp.org/jogl/www
ES 31 Ref Pages. GLSL ES 3.10 Spec. ES 30 Ref Card. GL 4 Ref Pages. GL 45 Core Spec. GL 45 Compat. Spec. GLSL 4.50 spec. GL 45 Ref Card. JavaOne 2007 BOF Slides. JavaOne 2006 BOF Slides. The JOGL project hosts the development version of the Java™ Binding for the OpenGL API, and is designed to provide hardware-supported 3D graphics to applications written in Java. OpenGL Evolution and JOGL. And the JOGL Specification. May give you a brief overview. JOGL also provides its own native windowing toolkit, NEWT.
ontology.iedb.org
ONTIE - ONTology of Immune Epitopes
http://ontology.iedb.org/downloads.htm
ONTIE - Ontology of Immune Epitopes. Here we provide several options for downloading the ONTIE ontology and the IEDB export. Please note that these are best viewed with the Protégé OWL editor (version 3.4.1 or version 4.0). To view the full export, it is recommended to allocate at least 500MB of RAM to Protégé. This file contains the classes and relations used in the IEDB export. First, load ONTIE.owl into Protege. Import the IEDB export.owl file as follows:. In Protege 3.4.1:. In Protege 4.0:. Make sure...
peerj.com
On the reproducibility of science: unique identification of research resources in the biomedical literature [PeerJ]
https://peerj.com/articles/148
Go to journal home. PeerJ (Life, Bio, and Health Sciences). PeerJ Preprints (not peer-reviewed). October 9, 2013:. On the reproducibility of science: unique identification of research resources in the biomedical literature. Ontology Development Group, Library, Oregon Health and Science University. Zebrafish Information Framework, University of Oregon. FlyBase, Department of Genetics, University of Cambridge. Vasilevsky NA, Brush MH, Paddock H, Ponting L, Tripathy SJ, LaRocca GM, Haendel MA. De Waard, 2010.
tools.iedb.org
Datasets
http://tools.iedb.org/main/datasets
For convenience, references and datasets related to benchmarking results of the IEDB Analysis Resource predictive tools are collected here. MHC class I binding prediction. Automated benchmarking of peptide-MHC class I binding predictions. Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M. Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. Kim Y, Sidney J, Buus S, Sette A, Nielsen M, Peters B. The datas...
garfield.dobzhanskycenter.org
UCSC Genome Browser: News Archives
http://garfield.dobzhanskycenter.org/goldenPath/newsarch.html
Cat Felis catus 6.2/felCat5. Reset All User Settings. 3 November 2015 — We are pleased to announce new quick links for the Browser's top menu bar! The "Genomes" menu now features direct links to jump to browsing the human (hg38 and hg19) and mouse (mm10 and mm9) assemblies! These links also preserve location information, such as a favorite gene's location, allowing users to quickly compare available annotation tracks between two assemblies. Key to view the entire list of shortcuts. Happy browsing! We wou...
james.overton.ca
James A. Overton: Projects
http://james.overton.ca/projects
James A. Overton. Thoughts on philosophy, science, and software. I build smarter software for science. Here's a list of my projects, my resumé. And some stuff I think is interesting. Ontology, science, consulting. Knocean is my consultancy. I help my clients multiply the value of their resources using linked data. Most of the software I write is open source and available on GitHub at github.com/ontodev. Ontology for Biomedical Investigations (OBI). Ontology, science, OBO, OBI. And a few others. The Natio...