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Martini Force Field Portal
Soft Matter & Molecular Biophysics Web Site
http://smmb.usc.es/tools.html
Soft Matter and Molecular Biophysics Group. Scripted Utility to Get Atomic Resolution by Positional Interpolation/Extrapolation. FOR THE IMPATIENTS (it is really easy): Click HERE. To start the current version of SUGAR-PIE! Is an application developed and maintained by Ángel Piñeiro, designed for the easy mapping of lipid bilayers from coarse-grain (CG) to atomistic (AT) resolution based on an interpolation/extrapolation approach of atomic positions. At the moment only the MARTINI. Force field, the Berger.
Soft Matter & Molecular Biophysics Web Site
http://alanine.usc.es/sugarpie/sugarpie.php
Soft Matter and Molecular Biophysics Group. Scripted Utility to Get Atomic Resolution by Positional Interpolation/Extrapolation. Is an application developed and maintained by Ángel Piñeiro, designed for the easy mapping of lipid bilayers from coarse-grain (CG) to atomistic (AT) resolution based on an interpolation/extrapolation approach of atomic positions. The current version works with lipid bilayers based on POPC and/or DPPC. At the moment only the MARTINI. Force field, the Berger. PLEASE, DO NOT INTR...
Soft Matter & Molecular Biophysics Web Site
http://alanine.usc.es/tools.html
Soft Matter and Molecular Biophysics Group. Scripted Utility to Get Atomic Resolution by Positional Interpolation/Extrapolation. FOR THE IMPATIENTS (it is really easy): Click HERE. To start the current version of SUGAR-PIE! Is an application developed and maintained by Ángel Piñeiro, designed for the easy mapping of lipid bilayers from coarse-grain (CG) to atomistic (AT) resolution based on an interpolation/extrapolation approach of atomic positions. At the moment only the MARTINI. Force field, the Berger.
Soft Matter & Molecular Biophysics Web Site
http://smmb.usc.es/sugarpie/sugarpie.php
Soft Matter and Molecular Biophysics Group. Scripted Utility to Get Atomic Resolution by Positional Interpolation/Extrapolation. Is an application developed and maintained by Ángel Piñeiro, designed for the easy mapping of lipid bilayers from coarse-grain (CG) to atomistic (AT) resolution based on an interpolation/extrapolation approach of atomic positions. The current version works with lipid bilayers based on POPC and/or DPPC. At the moment only the MARTINI. Force field, the Berger. PLEASE, DO NOT INTR...
Philip W Fowler | science, computing, life (but not in that order) | Page 2
https://philipwfowler.wordpress.com/page/2
Science, computing, life (but not in that order). New Publication: NRas slows the rate at which a model lipid bilayer phase separates. June 13, 2014. Here we examine by computer simulation what effect adding a small cell-signalling protein does to a model ternary lipid mixture that has been shown before to phase separate. This paper. Was presented at the 169th Faraday Discussion meeting. Tring to stop lectures from being so zzzz…Part 2. March 21, 2014. Continue reading →. March 6, 2014. Why are lectures ...
Downloads | The Yethiraj Research Group
http://yethiraj.chem.wisc.edu/downloads
The Yethiraj Research Group. University of Wisconsin-Madison Department of Chemistry. The BMW-MARTINI Coarse-grained Force Field. Please refer to the following references for detailed descriptions of the force field:. The BMW water model (Z. Wu, Q. Cui, A. Yethiraj; J. Phys. Chem. B 2010, 114, 10524-10529). The BMW-MARTINI force field (Z. Wu, Q. Cui, A. Yethiraj; J. Chem. Theory Comput. 2011, 7, 3793-3802; with supporting info.). Parameter files for the BMW-MARTINI force field. Please try NOT to mix thes...
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Aller à la recherche. Aller à la connexion. Médiathèque départementale du Puy-de-Dôme. Vous êtes ici :. A compter du lundi 31 août 2015, la Médiathèque départementale n'enverra plus par voie postale les avis de passage, d'acheminement ou de choix sur place. De plus, toujours à compter du 31 août 2015, la Médiathèque départementale n'enverra plus par courrier électronique les listes des documents réservés à nous retourner à l'occasion du passage de la navette Bibliodôme dédiée aux réservations. Réa...
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Coarse Grain Force Field for Biomolecular Simulations. Jump to main navigation and login. Example input Gromacs 4.x. Sugars alter membrane organization. Polymer scaffold carbon nanotube. Shock wave through membrane. Surface active ionic liquids. Martini topologies for a broad spectrum of molecules are readily available, as well as scripts to build membranes, to generate topologies for arbitrary peptides and proteins, to add elastic networks, and to move between coarse grained and atomistic representations.
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