mouse.genebee.msu.ru

S&S

The page of the interdisciplinary seminar/working group based on the Department of Mathematical Methods in Biology. Of AN Belozersky Institute. In investigations of biological features and 'living systems' we try to follow the approaches of Izrael Gelfand, the organizer of the Department. 151; a database of structures of DNA-protein and RNA-protein complexes. Old version of NPIDB. 151; a probe-level annotation database for Affymetrix expression microarrays. Genome assembly and annotation. 151; structural...

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The page of the interdisciplinary seminar/working group based on the Department of Mathematical Methods in Biology. Of AN Belozersky Institute. In investigations of biological features and 'living systems' we try to follow the approaches of Izrael Gelfand, the organizer of the Department. 151; a database of structures of DNA-protein and RNA-protein complexes. Old version of NPIDB. 151; a probe-level annotation database for Affymetrix expression microarrays. Genome assembly and annotation. 151; structural...

<META> KEYWORDS

1 structures and sequences

2 moscow state university

3 our projects

4 data base

5 npidb

6 plandbaffy

7 tools

8 clud

9 conclus

10 svetka

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structures and sequences,moscow state university,our projects,data base,npidb,plandbaffy,tools,clud,conclus,svetka,nhunt,npg explorer,plot hits,wlake,malakite,blocks 3d/pair cores,proton,architectures,and structural motifs,gcore,lcore,structalign,mtpro

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S&S | mouse.genebee.msu.ru Reviews

https://mouse.genebee.msu.ru

The page of the interdisciplinary seminar/working group based on the Department of Mathematical Methods in Biology. Of AN Belozersky Institute. In investigations of biological features and 'living systems' we try to follow the approaches of Izrael Gelfand, the organizer of the Department. 151; a database of structures of DNA-protein and RNA-protein complexes. Old version of NPIDB. 151; a probe-level annotation database for Affymetrix expression microarrays. Genome assembly and annotation. 151; structural...

INTERNAL PAGES

mouse.genebee.msu.ru

1

ArchiP homepage

http://mouse.genebee.msu.ru/archip

Roteins (ver. beta.1603061903). Of all-β and α/β-classes. Older version of ArchiP is available. Outline of ArchiP algorithm: 1. Protein structure in PDB format and β-sheet maps. And boudaries of α-helixes are taken as input.2. β-barrels, contacts between β-sheets and between β-sheets and layers of α-helixes are detected. 3. Architectuires. Are detected as a sets of contacted units (β-sheets, β-barrels and/or layers of α-helixes). Start new ArchiP job. Regions of β-sheets.

2

SheeP homepage

http://mouse.genebee.msu.ru/sheep

Uzzle (ver. beta.1603061903). SheeP displays schemes of β-sheet called draws β-sheet maps. Older version of SheeP is available. Outline of SheeP algorithm: 1. Protein structure in PDB format is taken as input. 2. Secondary structures are detected. 3. β-sheet maps. Are created. 4. Maps are modified. Start new SheeP job. Show sheet maps help. Location (up or down the sheet). Beta;-strands and α-helixes.

3

StructAlign

http://mouse.genebee.msu.ru/tools/StructAlign.html

StructAlign - a program for alignment of structures of DNA-protein complexes. Input PDB code of the first complex:. And chain of the protein (optional):. Input PDB code of the second complex:. And chain of the protein (optional):. If you get stuck with program input, try example data and click Align!

4

Nhunt: program for nucleic acid sequence similarity search

http://mouse.genebee.msu.ru/~bennigsen/nhunt

Nhunt: program for nucleic acid sequence similarity search. Nhunt 1.5.7 has arrived! Downloads: Linux x86 static binary. New matrix adjusment method was implemented. Nhunt 1.5.6 has arrived! Added parameter corresponding to the width of output alignment. Fixed homologue searching for very long query sequences. Nhunt 1.5.3 released. Nhunt 1.5.2 released.

5

LCore

http://mouse.genebee.msu.ru/tools/life_core.html

LCore is a program for classification of 3D structures of macromolecular complexes on the basis of their geometric core. Distance threshold (Å). Minimal core size (#aa's). Alternative core new atoms (%). Max number of cores on output. Core identifier for chain superimposition (0 for the main core).

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The page of the interdisciplinary seminar/working group based on the Department of Mathematical Methods in Biology. Of AN Belozersky Institute. In investigations of biological features and 'living systems' we try to follow the approaches of Izrael Gelfand, the organizer of the Department. 151; a database of structures of DNA-protein and RNA-protein complexes. Old version of NPIDB. 151; a probe-level annotation database for Affymetrix expression microarrays. Genome assembly and annotation. 151; structural...

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