omabrowser.org

OMA Orthology database: orthologs among hundreds of complete genomes across all of life

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Expand (e.g. to paste a long amino-acid sequence). Read our brief introduction to OMA. Familiarise yourself with the different types of orthologs provided. Get ideas about different types of analyses you could do with OMA. All data is available for downloading in a variety of formats. OMA standalone allows you to infer orthologs on your own set of genomes. Previous OMA releases remain available in this section.

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OMA Orthology database: orthologs among hundreds of complete genomes across all of life | omabrowser.org Reviews

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Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Expand (e.g. to paste a long amino-acid sequence). Read our brief introduction to OMA. Familiarise yourself with the different types of orthologs provided. Get ideas about different types of analyses you could do with OMA. All data is available for downloading in a variety of formats. OMA standalone allows you to infer orthologs on your own set of genomes. Previous OMA releases remain available in this section.

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OMA Orthology database: orthologs among hundreds of complete genomes across all of life | omabrowser.org Reviews

https://omabrowser.org

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Expand (e.g. to paste a long amino-acid sequence). Read our brief introduction to OMA. Familiarise yourself with the different types of orthologs provided. Get ideas about different types of analyses you could do with OMA. All data is available for downloading in a variety of formats. OMA standalone allows you to infer orthologs on your own set of genomes. Previous OMA releases remain available in this section.

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omabrowser.org

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OMA orthology database: Export for OMA Standalone

http://omabrowser.org/oma/export

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Add to selected genomes. Export of genomes and All/All for OMA standalone. In order to simplify analysis of customized genomes using the OMA Standalone application, we provide here users with precomputed all-against-all results, i.e. the most time-consuming part of the OMA pipeline. Users can simply augment the dataset with their new genomes and only the new genome-pairs will have to be aligned.

2

OMA orthology database: Explore conserved neighboring genes across genomes

http://omabrowser.org/oma/synteny

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. The synteny view provides an overview of the genomic context of a particular entry and its orthologs in other species. This enables to see conservation or divergence of syntenic regions across species. As synteny is computed with respect to a reference entry, please first search for a protein sequence of interest and click on the Synteny tab.

3

OMA orthology database: SOAP API

http://omabrowser.org/oma/APISOAP

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Simple Object Access Protocol. The OMA Browser API lets you integrate orthologs predictions from the OMA algorithm into your own programs or web services. The specification of the SOAP interface can be found here: http:/ omabrowser.org/omabrowser.wsdl. An easy way to explore the SOAP functionality of the OMA Browser is using a generic SOAP client. Try for example this web based client.

4

OMA orthology database: current release

http://omabrowser.org/oma/current

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. The entire OMA database is available for download in several formats. It is also possible to download each group separately. This option is available in the group view. Please read our terms and conditions before integrating OMA data into your own research or database. Pairs between two species:. Sequence matches, other cross-references come from source genome files directly. :. Mapping to Refseq ACs:.

5

OMA Orthology database: orthologs among hundreds of complete genomes across all of life

http://omabrowser.org/cgi-bin/gateway.pl

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Expand (e.g. to paste a long amino-acid sequence). Read our brief introduction to OMA. Familiarise yourself with the different types of orthologs provided. Get ideas about different types of analyses you could do with OMA. All data is available for downloading in a variety of formats. OMA standalone allows you to infer orthologs on your own set of genomes. Previous OMA releases remain available in this section.

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ant-city.com

蚂蚁城邦-生物医药网址导航

http://www.ant-city.com/db/nucleic.html

genenames.org

All tools | HUGO Gene Nomenclature Committee

http://www.genenames.org/tools/all

Use * to search with a root symbol (eg ZNF*). Old gene families archive. Statistics and downloads help. We have a selection of tools within the site that utilise the data that we store within our database. Below is a list of those tools with a brief description on the purpose of the tool. The HGNC Comparison of Orthology Predictions (HCOP). Search is a tool that integrates and displays the orthology assertions predicted for a specified human gene, or set of human genes, by EnsemblCompara.

caps.tcd.ie

CAPS Online

http://caps.tcd.ie/help.html

Below you can find a list of frequently asked questions as well as a list of help topics that are linked from the analysis and results pages. If you don't find all the help you need, please send an e-mail to one of the authors listed on the contact. How can I generate input files for CAPS? Tool provides a very comfortable way to generate a collection of sequences from a range of species for your protein of interest and align them on your desktop. Alternatively you can use OMA. To do this online. For inte...

omabrowser.blogspot.com

OMA Blog: Coming up: new release with 1613 genomes

http://omabrowser.blogspot.com/2014/02/coming-up-new-release-with-1613-genomes.html

Latest news about OMA and the OMA Browser. Thursday, February 27, 2014. Coming up: new release with 1613 genomes. Dear OMA users,. We have finished the computation of a new data set with 1613 genomes. The new data set will be available in the OMA Browser within the next days. This can cause a short interruption of the web server. Sorry for any inconveniences. The data of the current release will afterwards be available in the OMA Browser Archive. Subscribe to: Post Comments (Atom).

omabrowser.blogspot.com

OMA Blog: May 2012

http://omabrowser.blogspot.com/2012_05_01_archive.html

Latest news about OMA and the OMA Browser. Friday, May 25, 2012. New Release with 1211 genomes. We have finished the computation of a new data set including now orthologs among 1211 genomes. Besides 103 new genomes (including metazoans such as the tree shrew, the tasmanian devil or the gibbon) we again have updated many eukaryotic genomes, i.e. the yeast, the frog, the gorilla or the human genomes. The data of the previous release is still available in the OMA Browser Archive for download.

omabrowser.blogspot.com

OMA Blog: September 2014

http://omabrowser.blogspot.com/2014_09_01_archive.html

Latest news about OMA and the OMA Browser. Saturday, September 27, 2014. Try the new version of the OMA Browser! We have been working on a redesign of the omabrowser. If you are interested, please have a look at it and let us know what you think: http:/ cbrg-oma-test.ethz.ch. Subscribe to: Posts (Atom). Try the new version of the OMA Browser!

caps.tcd.ie

CAPS Online

http://caps.tcd.ie/caps/help.html

Below you can find a list of frequently asked questions as well as a list of help topics that are linked from the analysis and results pages. If you don't find all the help you need, please send an e-mail to one of the authors listed on the contact. How can I generate input files for CAPS? Tool provides a very comfortable way to generate a collection of sequences from a range of species for your protein of interest and align them on your desktop. Alternatively you can use OMA. To do this online. For inte...

genenames.org

HCOP: Orthology Predictions Search

http://www.genenames.org/cgi-bin/hcop

I:before {font-size: 14px; }. HUGO Gene Nomenclature Committee. Use * to search with a root symbol (eg ZNF*). Old Gene families archive. Statistics and downloads help. HCOP: Orthology Predictions Search. Search for ortholog(s) between. Select/deselect all ortholog resources. Ortholog data as a. Tab delimited text file. Ortholog data as a. Tab delimited text file. The work of the HGNC is supported by National Human Genome Research Institute (NHGRI) grant U41HG003345. And Wellcome Trust grant 099129/Z/12/Z.

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OMA Orthology database: orthologs among hundreds of complete genomes across all of life

Hierarchical orthologous groups (HOGs). Orthology between two genomes. OMA in a nutshell. Expand (e.g. to paste a long amino-acid sequence). Read our brief introduction to OMA. Familiarise yourself with the different types of orthologs provided. Get ideas about different types of analyses you could do with OMA. All data is available for downloading in a variety of formats. OMA standalone allows you to infer orthologs on your own set of genomes. Previous OMA releases remain available in this section.

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