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PepSite

A structural method to predict peptide/protein binding. Evangelia Petsalaki, Alexander Stark, Eduardo Garcia Urdiales, Rob Russell. Please try our newer, better and faster Pepsite2. This service will be discontinued mid 2012. When using PepSite please cite: Petsalaki E, Stark A, GarcÃa-Urdiales E, Russell RB, Accurate prediction of peptide binding sites on protein surfaces, PLoS Comput Biol. Logo courtesy of Tim Heckenhausen.

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A structural method to predict peptide/protein binding. Evangelia Petsalaki, Alexander Stark, Eduardo Garcia Urdiales, Rob Russell. Please try our newer, better and faster Pepsite2. This service will be discontinued mid 2012. When using PepSite please cite: Petsalaki E, Stark A, GarcÃa-Urdiales E, Russell RB, Accurate prediction of peptide binding sites on protein surfaces, PLoS Comput Biol. Logo courtesy of Tim Heckenhausen.
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PepSite | pepsite.russelllab.org Reviews

https://pepsite.russelllab.org

A structural method to predict peptide/protein binding. Evangelia Petsalaki, Alexander Stark, Eduardo Garcia Urdiales, Rob Russell. Please try our newer, better and faster Pepsite2. This service will be discontinued mid 2012. When using PepSite please cite: Petsalaki E, Stark A, GarcÃa-Urdiales E, Russell RB, Accurate prediction of peptide binding sites on protein surfaces, PLoS Comput Biol. Logo courtesy of Tim Heckenhausen.

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pepsite.russelllab.org pepsite.russelllab.org
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PepSite

http://pepsite.russelllab.org/cgi-bin/pepsite

A structural method to predict peptide/protein binding. Evangelia Petsalaki, Alexander Stark, Eduardo Garcia Urdiales, Rob Russell. Please try our newer, better and faster Pepsite2. This service will be discontinued mid 2012. If you have any problems or questions regarding PepSite please do not hesitate to Contact Us. PepSite takes as input. A peptide sequence no longer than 10 amino-acid residues. A protein structure in PDB. You can find examples. To try out the method here. Chain:residue number start -...

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3drepertoire.russelllab.org 3drepertoire.russelllab.org

Protein Evolution (Rob Russell)

http://www.3drepertoire.russelllab.org/images.shtml

Cancer severity from interaction mechanisms. Figure shows shorter survival across all cancers for tumors with mutations altering the P53-zinc interface (red) compared to others (green). Cancer severity from interaction mechanisms. Figure shows distinct populations within Breast carcinoma according to different mutations at the PIK3CA/PIK3R1 interface. Cancer severity from interaction mechanisms. Cancer severity from interaction mechanisms. Modelling of FFV gag protein. Figure shows the architecture of th...

mechismo.russelllab.org mechismo.russelllab.org

Protein Evolution (Rob Russell)

http://www.mechismo.russelllab.org/index.shtml

Cancer severity from interaction mechanisms. Cancer severity from interaction mechanisms. Cancer severity from interaction mechanisms. Cancer severity from interaction mechanisms. Modelling of FFV gag protein. A landscape of the human cilium. A landscape of the human cilium. A landscape of the human cilium. A landscape of the human cilium. Mechismo: Mechanistic interpretation of structural modifications. Mechismo: Mechanistic interpretation of structural modifications. RhoA mutations in Burkitt's lymphoma.

mechismo.russelllab.org mechismo.russelllab.org

Protein Evolution (Rob Russell)

http://www.mechismo.russelllab.org/images.shtml

Cancer severity from interaction mechanisms. Figure shows shorter survival across all cancers for tumors with mutations altering the P53-zinc interface (red) compared to others (green). Cancer severity from interaction mechanisms. Figure shows distinct populations within Breast carcinoma according to different mutations at the PIK3CA/PIK3R1 interface. Cancer severity from interaction mechanisms. Cancer severity from interaction mechanisms. Modelling of FFV gag protein. Figure shows the architecture of th...

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PepSite

A structural method to predict peptide/protein binding. Evangelia Petsalaki, Alexander Stark, Eduardo Garcia Urdiales, Rob Russell. Please try our newer, better and faster Pepsite2. This service will be discontinued mid 2012. When using PepSite please cite: Petsalaki E, Stark A, GarcÃa-Urdiales E, Russell RB, Accurate prediction of peptide binding sites on protein surfaces, PLoS Comput Biol. Logo courtesy of Tim Heckenhausen.

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PepSite

Run PepSite on a PDB structure. Run PepSite on your own PDB file. Prediction of peptide binding sites on protein surfaces. Protein-peptide interactions are a vital part of many cellular signaling pathways (e.g., RTK signaling) and other cellular processes (e.g., endocytosis). A detailed view of such interactions enables a mechanistic description of how cell networks are regulated. When using PepSite 2, please cite:. PepSite: prediction of peptide-binding sites from protein surfaces.

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