phytophthora-smallrna-db.cgrb.oregonstate.edu

Phytophthora smallRNA Database | P. smallRNA DB

Submitted by admin on Fri, 06/24/2011 - 23:36. Which have recently been sequenced, belong to an important group of plant pathogens that cause multibillion-dollar damage to crops, ornamental plants, and natural environments. Their recent phylogenetic placement in the Chromalveolate supergroup, which has undergone minimal analysis of small RNA pathways to date, along with their major agricultural impact makes the. Species ideal for unique small RNA pattern analysis. This project is supported by the Nationa...

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Phytophthora smallRNA Database | P. smallRNA DB | phytophthora-smallrna-db.cgrb.oregonstate.edu Reviews

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Submitted by admin on Fri, 06/24/2011 - 23:36. Which have recently been sequenced, belong to an important group of plant pathogens that cause multibillion-dollar damage to crops, ornamental plants, and natural environments. Their recent phylogenetic placement in the Chromalveolate supergroup, which has undergone minimal analysis of small RNA pathways to date, along with their major agricultural impact makes the. Species ideal for unique small RNA pattern analysis. This project is supported by the Nationa...

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Phytophthora smallRNA Database | P. smallRNA DB | phytophthora-smallrna-db.cgrb.oregonstate.edu Reviews

https://phytophthora-smallrna-db.cgrb.oregonstate.edu

Submitted by admin on Fri, 06/24/2011 - 23:36. Which have recently been sequenced, belong to an important group of plant pathogens that cause multibillion-dollar damage to crops, ornamental plants, and natural environments. Their recent phylogenetic placement in the Chromalveolate supergroup, which has undergone minimal analysis of small RNA pathways to date, along with their major agricultural impact makes the. Species ideal for unique small RNA pattern analysis. This project is supported by the Nationa...

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phytophthora-smallrna-db.cgrb.oregonstate.edu

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Phytophthora sojae v4.0: 12 bp from super_2:1,343,342..1,343,353

http://phytophthora-smallrna-db.cgrb.oregonstate.edu/cgi-bin/gb2/gbrowse/Psojae

Recenter on this region. Dump selection as FASTA. Submit selection to NCBI BLAST. Help with this browser. Show my user ID. Log in / create account. Phytophthora sojae v4.0: 12 bp from super 2:1,343,342.1,343,353. Download Decorated FASTA File. Phytophthora infestans v4.0. Phytophthora sojae v4.0. Mycelium small RNA (OSU rep1). Mycelium small RNA (OSU rep1). Show Active Tracks Only. Search for Specific Tracks. Search for Specific Tracks. Stick to top when scrolled. Transposable elements and repeats. Zoosp...

2

Acknowledgments/References | P. smallRNA DB

http://phytophthora-smallrna-db.cgrb.oregonstate.edu/acknowledgments

Submitted by admin on Fri, 06/24/2011 - 23:44. This resource was developed by Josh Cuperus, Stephanie Bollmann, Ian Brasted and Deepthika Ennamuri. This project is supported by the National Research Initiative Competitive Grants Program Grant no. 2007-04672; and the Agriculture and Food Research Initiative Competitive Grants Program Grant no. 2010-04845 from the USDA National Institute of Food and Agriculture. Please cite the following paper if you use this resource:. SmallRNA-DB.org Contact us.

3

Downloads | P. smallRNA DB

http://phytophthora-smallrna-db.cgrb.oregonstate.edu/downloads

Submitted by admin on Tue, 06/28/2011 - 02:53. To download, please right click the link and select Save As. Some of these files are extremely large for text files and may take a long time to download. Fasta associated with genome. This project is supported by the National Research Initiative Competitive Grants Program Grant no. 2007-04672; and the Agriculture and Food Research Initiative Competitive Grants Program Grant no. 2010-04845 from the USDA National Institute of Food and Agriculture.

4

Phytophthora smallRNA Database | P. smallRNA DB

http://phytophthora-smallrna-db.cgrb.oregonstate.edu/home

Submitted by admin on Fri, 06/24/2011 - 23:36. Which have recently been sequenced, belong to an important group of plant pathogens that cause multibillion-dollar damage to crops, ornamental plants, and natural environments. Their recent phylogenetic placement in the Chromalveolate supergroup, which has undergone minimal analysis of small RNA pathways to date, along with their major agricultural impact makes the. Species ideal for unique small RNA pattern analysis. This project is supported by the Nationa...

5

User account | P. smallRNA DB

http://phytophthora-smallrna-db.cgrb.oregonstate.edu/user

Enter your P. smallRNA DB username. Enter the password that accompanies your username. This project is supported by the National Research Initiative Competitive Grants Program Grant no. 2007-04672; and the Agriculture and Food Research Initiative Competitive Grants Program Grant no. 2010-04845 from the USDA National Institute of Food and Agriculture. SmallRNA-DB.org Contact us.

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grunwaldlab.cgrb.oregonstate.edu

Getting ready | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetics/getting-ready

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. On Tue, 2013-10-08 13:23. If you have never used the computing and programming language R this page is for you. To get you going you need to first install R, a graphics user environment and the R packages needed to. Donwload and install R. After installing R we suggest you install Rstudio next.

grunwaldlab.cgrb.oregonstate.edu

Publications: Journal articles | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/lab-biblio

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Knaus, BJ , JF Tabima, CE Davis, HS Judelson, and NJ Grünwald. Genomic Analyses Of Dominant Us Clonal Lineages Of Phytophthora Infestans Reveals A Shared Common Ancestry For Clonal Lineages Us11 And Us18 And A Lack Of Recently Shared Ancestry Among All Other Us Lineages. Grünwald, Niklaus J, ...

grunwaldlab.cgrb.oregonstate.edu

News | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/external-notebook

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. The external notebooks are tools and notes from the laboratory to the public. Create a new external notebook page. Downloads of our R packages to date. On Wed, 2016-05-25 15:24. It is nice to see all the CRAN package downloads from the lab:. Read more about Downloads of our R packages to date.

grunwaldlab.cgrb.oregonstate.edu

Resources | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/resources

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Links from our lab. Links for interested graduate students. In Department of Botany and Plant Pathology, Oregon State University. Molecular and Cellular Biology Graduate program. Links to our favorite institutions. Department of Botany and Plant Pathology,. USDA Agricultural Research Service.

grunwaldlab.cgrb.oregonstate.edu

Poppr: An R package for population genetics | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetics

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Poppr: An R package for population genetics. Is an R package useful in analysis of population genetic data. Introduces core functions for analysis of populations with mixed modes of reproduction typically observed for microbial populations including a blend of asexual and sexual reproduction.

grunwaldlab.cgrb.oregonstate.edu

Acknowledgements | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/acknowledgements

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. We thank the following sources for major support of our research:. USDA Agricultural Research Service. Horticultural Crops Research Laboratory. Floriculture Nursery Research Initiative. Northwest Nursery Crops Research Center. Department of Botany and Plant Pathology.

grunwaldlab.cgrb.oregonstate.edu

User account | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/user

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Log in (active tab). Enter your Grünwald Lab username. Enter the password that accompanies your username. Horticultural Crops Research Laboratory, USDA ARS. Department of Botany and Plant Pathology, Oregon State University. 3420 NW Orchard Ave., Corvallis, OR 97330.

grunwaldlab.cgrb.oregonstate.edu

Installation, Documentation, and Resources | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/primer-population-genetic-analyses-r/installation

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Installation, Documentation, and Resources. On Thu, 2013-01-17 13:15. Make sure you installed R before proceeding. Check that your version of R is ≥ 2.15.1. We recommend installing R studio. As a graphic user interface for R. In your R console, type:. Data Import and Manipulation.

grunwaldlab.cgrb.oregonstate.edu

Spatial and temporal analysis of populations of the sudden oak death pathogen in Oregon forests | Grünwald Lab

http://grunwaldlab.cgrb.oregonstate.edu/spatial-and-temporal-analysis-populations-sudden-oak-death-pathogen-oregon-forests

News coverage Origin of Phytophthora infestans paper. Zhian Kamvar featured on OSU Stories. Interview with graduate student Javier Tabima. Links for prospective graduate students, undergrads and visiting scientists. Spatial and temporal analysis of populations of the sudden oak death pathogen in Oregon forests. On Sun, 2015-06-14 10:12. Spatial and temporal analysis of populations of the sudden oak death pathogen in Oregon forests. Kamvar, ZN, Larsen, MM, Kanaskie, AM, Hansen, EM, Grünwald, NJ.

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Submitted by admin on Fri, 06/24/2011 - 23:36. Which have recently been sequenced, belong to an important group of plant pathogens that cause multibillion-dollar damage to crops, ornamental plants, and natural environments. Their recent phylogenetic placement in the Chromalveolate supergroup, which has undergone minimal analysis of small RNA pathways to date, along with their major agricultural impact makes the. Species ideal for unique small RNA pattern analysis. This project is supported by the Nationa...

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