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pir.georgetown.edu

Welcome to PIR [Protein Information Resource]

The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Current release: 2018 03. Representation of protein objects with descriptions and relationships. 42; Sample PRO report. Visual analysis of PTM networks, cross-talks, and conservation. 42; Sample iPTMnet report. Access to text mining tools and annotated corpora. Extraction of kinase, substrate and site. 42; Sample RLIMS-P report.

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Welcome to PIR [Protein Information Resource] | pir.georgetown.edu Reviews
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The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Current release: 2018 03. Representation of protein objects with descriptions and relationships. 42; Sample PRO report. Visual analysis of PTM networks, cross-talks, and conservation. 42; Sample iPTMnet report. Access to text mining tools and annotated corpora. Extraction of kinase, substrate and site. 42; Sample RLIMS-P report.
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1 protein search
2 site search
3 uniprotkb
4 uniref
5 uniparc
6 browse pro
7 annotate with race pro
8 ptm enzyme substrate site relations
9 batch retrieval
10 rlims p
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protein search,site search,uniprotkb,uniref,uniparc,browse pro,annotate with race pro,ptm enzyme substrate site relations,batch retrieval,rlims p,mirtex,other resource,reference proteomes,proclass,proxpress,resid,peptide search,database,text search
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Welcome to PIR [Protein Information Resource] | pir.georgetown.edu Reviews

https://pir.georgetown.edu

The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Current release: 2018 03. Representation of protein objects with descriptions and relationships. 42; Sample PRO report. Visual analysis of PTM networks, cross-talks, and conservation. 42; Sample iPTMnet report. Access to text mining tools and annotated corpora. Extraction of kinase, substrate and site. 42; Sample RLIMS-P report.

INTERNAL PAGES

pir.georgetown.edu pir.georgetown.edu
1

iProClass [PIR - Protein Information Resource]

https://pir.georgetown.edu/pirwww/dbinfo/iproclass.shtml

The iProClass database provides value-added information reports for UniProtKB. And unique NCBI Entrez protein sequences in UniParc , with links to over 160 biological databases. IProClass is implemented in Oracle system, and can be used to support protein sequence annotation and genomic/proteomic research, to obtain comprehensive up-to-date information on proteins and, in addition, to protein ID mapping. For more information, please see the Tutorial. 15 Innovation Way, Suite 205. Newark, DE 19711, USA.

2

Welcome to PIR [Protein Information Resource]

https://pir.georgetown.edu/pirwww

The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Current release: 2016 07. Representation of protein objects with descriptions and relationships. 42; Sample PRO report. Value-added reports for UniProtKB. Functional analysis and protein ID mapping. 42; Sample protein report. Access to text mining tools and annotated corpora. Extraction of kinase, substrate and site.

3

iProXpress [PIR - Protein Information Resource]

https://pir.georgetown.edu/iproxpress

ProXpress has been applied to the following data sets:. Chi et al., 2006. Hu et al., 2007. Hu et al., 2008. 15 Innovation Way, Suite 205. Newark, DE 19711, USA. Georgetown University Medical Center. 3300 Whitehaven Street, NW, Suite 1200. Washington, DC 20007, USA.

4

iProClass

https://pir.georgetown.edu/iproclass

5

Biocuration 2012

https://pir.georgetown.edu/biocuration2012.html

The Conference of the International Society for Biocuration. April 2-4, 2012 Washington DC, USA. The conference will include three plenary talks featuring established scientists that lead projects relying upon curated data types. The plenary speakers are Fritz Roth. Two satellite workshops will take place at the same venue: BioCreative-2012. Interactive Text Mining in the Biocuration Workflow, April 4-5 and GMOD Community Meeting , April 5-6. NEW* Travel Fellowship * NEW*. NEW* Papers Published * NEW*.

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creative-biomics.com creative-biomics.com

Creative Biomics

http://www.creative-biomics.com/resource.asp?classid=15

Documents and Tutorials. Documents and Tutorials. GenBank: National Center for Biotechnology Information. EMBL Nucleotide Sequence Database. DDBJ: DNA Data Bank of Japan. UniProt: United Protein Databases. PIR Protein Sequence Database. Gene Expression Omnibus (GEO, NCBI). READ (RIKEN cDNA Expression Array Database). Standford Microarray Database (SMD). Pathway and network databases. KEGG:Kyoto Encyclopedia of Genes and Genomes. PID: NCI-Nature Pathway Interaction Database.

biocreative2015.org biocreative2015.org

BioCreative Workshop 2015 | Sevilla, Spain - General Information - Topics

http://www.biocreative2015.org/general-information/topics

BioCreative: Critical Assessment of Information Extraction in Biology. Is a community-wide effort for evaluating text mining and information extraction systems applied to the biological domain. Built on the success of the previous BioCreative Challenge Evaluations and Workshops ( BioCreative I, II, II.5, III, 2012 workshop, and IV. Will host the BioCreative V Challenge. In Sevilla, Spain on September 9-11, 2015. Extraction of causal network information in Biological Expression Language. The importance an...

thavrakhuon.blogspot.com thavrakhuon.blogspot.com

Dr. Thavrak Huon from South Korea: August 2009

http://thavrakhuon.blogspot.com/2009_08_01_archive.html

August 14, 2009. Determinants governing the CYP74 catalysis: Conversion of allene oxide synthase into hydroperoxide lyase by site-directed mutagenesis. Cytochrome P450; CYP74 family; Allene oxide synthase; Hydroperoxide lyase; Site-directed mutagenesis. Source: FEBS Letters (2008) Vol. 582, Issues 23-24, Pages 3423-3428. Subscribe to: Posts (Atom). News and Reading List. Determinants governing the CYP74 catalysis: Conver. Amino acid Hydropathicity Plots. ClustalW2 - Multiple sequence alignments. A Novel ...

biokemia.lap.hu biokemia.lap.hu

Biokémia.lap.hu

http://biokemia.lap.hu/akadalymentesitett

Fehérje adatbázisok, programok. Magyar egyetemek biokémiai tanszékei. Szekvencia illesztés, hasonlósági keresés, programcsomagok. Nukleinsav adatbázisok, kezelőfelületek, programok. Magyar intézetek, kapcsolódó szervezetek. Külföldi és nemzetközi szervezetek. Fehérje adatbázisok, programok. Funkcionálisan annotált fehérje adatbázis (PIR). TrEMBL (DNS adatbázis transzláció). Fehérje családok, domének, motívumok (PROSITE). 2-dimenziós PAGE - proteomok. Coiled coil predikció (EMBnet). SZENT ISTVÁN EGYETEM ÁK.

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Dr. Thavrak Huon from South Korea: April 2009

http://thavrakhuon.blogspot.com/2009_04_01_archive.html

April 28, 2009. My Article on BKCS 2009. A Substrate Serves as a Hydrogen Atom Donor in the Enzyme-Initiated Catalytic Mechanism of Dual Positional Specific Maize Lipoxygenase-1. Bulletin of the Korean Chemical Society. (2009) vol 30, pages 719-723. Full Text in PDF. April 26, 2009. Biosynthesis and Metabolism of Jasmonates. Source: Journal of Plant Growth Regulation (2005) vol. 23, p. 179-199. Subscribe to: Posts (Atom). News and Reading List. My Article on BKCS 2009. Amino acid Hydropathicity Plots.

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Dr. Thavrak Huon from South Korea: Tomato CYP74C3 is a Multifunctional Enzyme not only Synthesizing Allene Oxide but also Catalyzing its Hydrolysis and Cyclization

http://thavrakhuon.blogspot.com/2009/09/tomato-cyp74c3-is-multifunctional_5136.html

September 2, 2009. Tomato CYP74C3 is a Multifunctional Enzyme not only Synthesizing Allene Oxide but also Catalyzing its Hydrolysis and Cyclization. Allene oxide synthase • enzyme catalysis • metabolism • oxylipins • tomato. Source: ChemBioChem (2008) Vol. 9, Issue 15, p. 2498 - 2505. Hi Bong Thavrak,. Great job. You are one of the few Cambodians Ive seen doing biochemical research. Are you also doing genetic engineering, aka directed evolution like Error-prone PCR or DNA shuffling? News and Reading List.

thavrakhuon.blogspot.com thavrakhuon.blogspot.com

Dr. Thavrak Huon from South Korea: November 2008

http://thavrakhuon.blogspot.com/2008_11_01_archive.html

November 21, 2008. An improved Agrobacterium -mediated transformation protocol for recalcitrant elite indica rice cultivars. We report here a high-efficiency transformation protocol for recalcitrant indica rice cultivars IR64 and IR72 with the selectable marker. And thegusA reporter gene. Factors that favor high-efficiency transformation were found to be use of 2-month-old mature seed-derived embryogenic calli, maltose as a source of carbon, a higher concentration of 2,4-dichlorophenoxyacetic acid, a...

fruity-updates.blogspot.com fruity-updates.blogspot.com

Fruity Updates........By IIDSians: Structure and Interpretation of Computer Programs (SICP)

http://fruity-updates.blogspot.com/2012/09/structure-and-interpretation-of.html

Fruity Updates.By IIDSians. WE MOVE THE WORD. , WE ARE IIDSians - - -. Friday, 7 September 2012. Structure and Interpretation of Computer Programs (SICP). Structure and Interpretation of Computer Programs. Using a dialect of the Lisp programming language known as Scheme, the book explains core computer science concepts, including abstraction, recursion, interpreters and metalinguistic abstraction, and teaches modular programming. Labels: Development /Programming Books. Subscribe to: Post Comments (Atom).

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Fruity Updates........By IIDSians: An Introduction to Genetic Algorithms- Melanie Mitchell

http://fruity-updates.blogspot.com/2012/09/an-introduction-to-genetic-algorithms.html

Fruity Updates.By IIDSians. WE MOVE THE WORD. , WE ARE IIDSians - - -. Wednesday, 5 September 2012. An Introduction to Genetic Algorithms- Melanie Mitchell. Subscribe to: Post Comments (Atom). Bioinfo Ist sem Papers. Lessons for life -by Indians. A Practical Approach to Microarray Data Analysis. Structure and Interpretation of Computer Programs . Computational Biology: Genomes, Networks, Evolutio. An Introduction to Genetic Algorithms- Melanie Mit. DNA Molecular Structure and Dynamics.

thavrakhuon.blogspot.com thavrakhuon.blogspot.com

Dr. Thavrak Huon from South Korea: Evidence for an Ionic Intermediate in the Transformation of Fatty Acid ...

http://thavrakhuon.blogspot.com/2009/10/evidence-for-ionic-intermediate-in_4863.html

October 26, 2009. Evidence for an Ionic Intermediate in the Transformation of Fatty Acid . Evidence for an Ionic Intermediate in the Transformation of Fatty Acid Hydroperoxide by a Catalase-related Allene Oxide Synthase from the Cyanobacterium Acaryochloris marina. Source: J. Biol. Chem. (2009) vol. 284, p. 22087-22098. Subscribe to: Post Comments (Atom). News and Reading List. Evidence for an Ionic Intermediate in the Transfor. Amino acid Hydropathicity Plots. ClustalW2 - Multiple sequence alignments.

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pir.georgetown.edu pir.georgetown.edu

Welcome to PIR [Protein Information Resource]

The Universal Protein Resource (UniProt) provides the scientific community with a single, centralized, authoritative resource for protein sequences and functional information. Current release: 2018 03. Representation of protein objects with descriptions and relationships. 42; Sample PRO report. Visual analysis of PTM networks, cross-talks, and conservation. 42; Sample iPTMnet report. Access to text mining tools and annotated corpora. Extraction of kinase, substrate and site. 42; Sample RLIMS-P report.

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