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PRIMe: Platform for RIKEN MetabolomicsPRIMe: Platform for RIKEN Metabolomics
http://prime.psc.riken.jp/
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http://prime.psc.riken.jp/
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PRIMe: Platform for RIKEN Metabolomics | prime.psc.riken.jp Reviews
https://prime.psc.riken.jp
PRIMe: Platform for RIKEN Metabolomics
prime.psc.riken.jp
Data processing and statistical analysis tools for metabolomics and lipidomics research
http://prime.psc.riken.jp/Metabolomics_Software
Data processing and statistical analysis tools for metabolomics and lipidomics research. Dr Hiroshi Tsugawa, PhD. The MS-DIAL section was improved especially for MSP databases. And it also includes the update of MS-DIAL's LipidBlast to deal with Ceramide species. Hydrogen rearrangement rules (MS-FINDER) paper was formally published. New curated MS/MS spectra (from MassBank, GNPS, ReSpect) were uploaded in MS-DIAL section. MS-FINDER ver. 1.70 was released. Bug fixed. MS-DIAL ver. 2.02 was released. MS-DIA...
MeKO@PRIMe
http://prime.psc.riken.jp/meko
Metabolomic Characterization of Knock-Out Mutants in Arabidopsis - Development of a Metabolite Profiling Database for Knock-Out Mutants in Arabidopsis (MeKO). Metabolomics 2013 @ Glasgow, UK (Oral session: O3B-1). Apr 28, 2014. Updated metabolites and mutants page. A new "how-to" manual was added here. Apr 8, 2014. Updated metabolic pathways and experimental metadata. Mar 27, 2014. Updated Metabolite pages and processed/non-processed data. Oct 10, 2012.
MS2T
http://prime.psc.riken.jp/lcms/ms2tview/ms2tview.html
MS/MS spectral tag (MS2T) viewer. 7/4/2009 ver 1.01. FMatsuda, Metabolome analysis research team, RIKEN PSC. MS/MS spectral tag (MS2T) libraries are collections of phytochemical MS2 spectral data obtained by using an automatic MS2 acquistion function of LC-ESI-Q-TOF/MS (Waters Aquity Q-TOF). The basic concept of MS2T and its application for metabolite annotation are explained in Matsuda et al (2008) Plant J 57: 555-77. ATH01p:Arabidopsis thaliana (Col-0, Shoot 4week-old). ATH15p:Arabidopsis thaliana (Mix...
AtMetExpress LCMS
http://prime.psc.riken.jp/lcms/AtMetExpress
10/8/2011 ver 1.1. Fumio Matsuda, Metabolome analysis research team, RIKEN PSC. AtMetExpress LC-MS ia a phytochemical atlas of Arabidopsis thaliana. Now, following two datasets are available. AtMetExpress 20 Ecotypes LC-MS. We analyzed phytochemical accumulation during development of the model plant Arabidopsis thaliana using liquid chromatography-mass spectrometry (LC-MS) in samples covering many growth stages and organs. We also obtained MS/MS spectral tags of many metabolites as a resource for elu...
PRIMe LC-MS Branch
http://prime.psc.riken.jp/lcms
Liquid chromatography-mass spectrometry (LC-MS) branch of the Platform for RIKEN Metabolomics (PRIMe) pipeline is now ready for the analysis of plant secondary metabolites. The deta produced in the this branch will be distributed from this page. We wish to thank Mr. K. Akiyama and T. Sakurai in Integrated genome informatics research unit for helpful support. Matsuda et al (2010) AtMetExpress development: A phytochemical atlas of Arabidopsis thaliana development Plant Physiol. In press. [Pubmed]. From Act...
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ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/members/members
Researcher (Metabolic Systems Research Team, RIKEN CSRS, JST/CREST). Sample preparation, data acquisition, and management. Research Scientist (Metabolomics Research Group, RIKEN CSRS, JST/CREST). Data curation and project management. We welcome any messages, comments, and questions about the ReSpect project. Postdoctral Researcher (Metabolomics Research Group, RIKEN CSRS). Technical assistant (Integrated Genome Informatics Research Unit, RIKEN CSRS). System Development and data management. 9650; Page Top.
ReSpect for Phytochemicals
http://spectra.psc.riken.jp/menta.cgi/respect/licence/licence
This work is licensed under a Creative Commons Attribution - Noncommercial 2.1 Japan License. This website (http:/ spectra.psc.riken.jp/) is managed by RIKEN Center for Sustainable Resource Science. The legal title to all data in this website remains in RIKEN. Any person who accesses and uses this website should note and agree the following terms and conditions prior to using this website. RIKEN Center for Sustainable Resource Science : Metabolomics Research Group, LC-MS Branch.
Metabolomics websites
http://www.metabolomics-nrp.org.uk/links.html
Metabolomics on the NRP. Metabolomic and Fluxomic French Network. Metabolomics Research at Imperial College. UK Centre for Plant and Microbial Metabolomics. RIKEN metabolomics research group. Mark Viant's research group. Metabolomics at the Samuel Roberts Noble Foundation. Joshua Rabinowitz, Princeton. The Human Metabolome project. Biological Magnetic Resonance Data Bank. NMR metabolomics database of Linkoping, Sweden. Spectral Database for Organic Compounds SDBS.
Database, Pathway
http://metabolomics.chem.agilent.com/Knowledge-Center/122337-Database-Pathway
Genomics Services and Support. Columns and Sample Preparation. GC and GC/MS Columns-NO IMAGES. LC and LC/MS Columns-NO CONTENT. Parts and Supplies-NO CONTENT. Chromatography and Spectrometry-NO CONTENT. Microarrays and FISH Probes. CGH and CGH SNP. Chemical Standards-MISSING ALSO NEED TOP SITE. Cloning, Cells and Expression. Food Testing and Agriculture. Geochemistry, Mining and Metals. Materials Testing and Research. Proteomics and Protein Sciences. Small Molecule Pharmaceuticals and Generics. Watervill...
NMR: Published Papers
http://gabrielratanmr.blogspot.com/2008/10/published-papers.html
Short description of my NMR research. Wednesday, October 8, 2008. The papers listed below are available here: Gabriel Rata's articles. Phd Thesis: Investigation of material properties by NMR in low and high magnetic fields, RWTH Aachen, Germany abstract of the thesis, English and German language. D E Demco, D. G. Rata. R Fechete, and B. Blümich, Self-Diffusion Anisotropy of Small Penetrant Molecules in Deformed Elastomers. Macromolecules (2005), 38, 5647-5653 Download article. Accepted 06 2008, Polymer.
NMR: October 2008
http://gabrielratanmr.blogspot.com/2008_10_01_archive.html
Short description of my NMR research. Wednesday, October 8, 2008. In the time of the postdoc at Physical Chemistry 1 at Lund University, i participate at 2 Bruker courses in Germany. The first course was a course of MRI, in the spring of 2007. The second was: the HR-MAS course, in 18 October 2007 at Bruker site in Rheinstetten, close to Karlsruhe. Wednesday, October 08, 2008. The papers listed below are available here: Gabriel Rata's articles. D E Demco, D. G. Rata. Crisan Popescu, Kim-Hoˆ Phan, Angelika...
NMR: July 2008
http://gabrielratanmr.blogspot.com/2008_07_01_archive.html
Short description of my NMR research. Monday, July 14, 2008. In this post I would like to include the scientific conferences where I made a small contribution. Improved diagnostics of joints by MRI, CT and Biomarkers, 27-28 March 2008 UMAS, Malmö, Gabriel Rata, Tissue property assessment at high field. Link: http:/ www.med.lu.se/content/download/24346/173447/file/ProgramMRI-meeting.pdf. EENC/AMPERE joint meeting, Lille, France, September 6-11 (2004). ANALYSIS OF POROUS MATERIALS BY THE NMR-MOUSE (poster).
pbiotech.sci.yokohama-cu.ac.jp
LINK | 公立大学法人 横浜市立大学 木原生物学研究所 植物応用ゲノム科学部門
http://pbiotech.sci.yokohama-cu.ac.jp/smd/index.php/link
公立大学法人 横浜市立大学 木原生物学研究所 植物応用ゲノム科学部門.
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PRIMe: Platform for RIKEN Metabolomics
The Platform for RIKEN Metabolomics, is a Web-based service for metabolomics and transcriptomics as systems for understanding life. This project measures standard metabolites by means of multi-dimensional NMR spectroscopy, GC/MS, LC/MS, and CE/MS. We also provide unique tools for metabolomics, transcriptomics, and integrated analysis of a range of other "-omics" data. April 3 ,2017 PRIMe Renewal open. 9658; Change log. February 11, 2017. January 16, 2017. June 2, 2015. April 28, 2014. January 24, 2014.
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