prosplicer.mbc.nctu.edu.tw

ProSpilcer

An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Is a putative alternative splicing database which stores alternative splicing information. These information are produced from variant proteins and expression patterns of a gene. Protein sequences, messenger RNA and expressed sequence tags (ESTs) provide valuable information about splice variants of genes. Suggested Browsers: IE 5.0 or above, and Netscape 4.79 or above). Gene Name, e.g., BRC). TTTCATTATTTAGAAATGTAAACATTTATTTAAAAG...

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ProSpilcer | prosplicer.mbc.nctu.edu.tw Reviews

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An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Is a putative alternative splicing database which stores alternative splicing information. These information are produced from variant proteins and expression patterns of a gene. Protein sequences, messenger RNA and expressed sequence tags (ESTs) provide valuable information about splice variants of genes. Suggested Browsers: IE 5.0 or above, and Netscape 4.79 or above). Gene Name, e.g., BRC). TTTCATTATTTAGAAATGTAAACATTTATTTAAAAG...

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1 about prosplicer

2 statistic

3 database comparison

4 release 3 0

5 prosplicer

6 citing prosplicer

7 query fields

8 gene name

9 ensembl gene id

10 swiss prot protein id

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ProSpilcer | prosplicer.mbc.nctu.edu.tw Reviews

https://prosplicer.mbc.nctu.edu.tw

An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Is a putative alternative splicing database which stores alternative splicing information. These information are produced from variant proteins and expression patterns of a gene. Protein sequences, messenger RNA and expressed sequence tags (ESTs) provide valuable information about splice variants of genes. Suggested Browsers: IE 5.0 or above, and Netscape 4.79 or above). Gene Name, e.g., BRC). TTTCATTATTTAGAAATGTAAACATTTATTTAAAAG...

INTERNAL PAGES

prosplicer.mbc.nctu.edu.tw

1

ProSplicer Gene BRCA1

http://prosplicer.mbc.nctu.edu.tw/demotemp.php?Query_text=ENSG00000012048

An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Breast cancer type 1 susceptibility protein (RING finger protein 53). [Source:Uniprot/SWISSPROT;Acc:P38398]. Other Alternative Splicing Datebases. Current Time: 4:04 AM, April 12, 2017. Department of Computer Science and Information Engineering. No300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan 320 , R.O.C. Contact with damay@db.csie.ncu.edu.tw.

2

ProSplicer Search Result

http://prosplicer.mbc.nctu.edu.tw/dlist.php?type=1&Query_text=BRC

An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Query by Gene Name. Breast cancer type 1 susceptibility protein (RING finger protein 53). [Source:Uniprot/SWISSPROT;Acc:P38398]. Breast cancer type 2 susceptibility protein (Fanconi anemia group D1 protein). [Source:Uniprot/SWISSPROT;Acc:P51587]. Current Time: 4:04 AM, April 12, 2017. Department of Computer Science and Information Engineering. No300, Jung-Da Rd., Chung-li , Tao-yuan, Taiwan 320 , R.O.C.

3

Show SIM4 / tBLASTn alignment result

http://prosplicer.mbc.nctu.edu.tw/ProSplicer/cgi-bin/align.cgi?emp_id=Q63699&emp_gi=Q63699&gs_id=ENSG00000008128&type=3

Show SIM4 / tBLASTn alignment result. Query Sequence ID: Q63699. Subject Sequence ID: ENSG00000008128. Subject Sequence type: 3.

4

About ProSplicer

http://prosplicer.mbc.nctu.edu.tw/about/prosplicer.htm

A Putative Alternative Splicing Database Based on Proteins, mRNAs and EST Clusters. Jorng-Tzong Horng, Hsien-Da Huang, Chau-Chin Lee, and Baw-Jhiune Liu. Department of Computer Science and Information Engineering, Department of Life Science,. National Central University, Taiwan,. Department of Computer Science and Engineering, Yuan-Ze University, Taiwan. Horng@db.csie.ncu.edu.tw*. Contact: horng@db.csie.ncu.edu.tw. Comparison between different alternative splicing databases. 90,000 EST clusters. Human, m...

5

Show SIM4 / tBLASTn alignment result

http://prosplicer.mbc.nctu.edu.tw/ProSplicer/cgi-bin/align.cgi?emp_id=NM_000059.1&emp_gi=NM_000059.1&gs_id=ENSG00000139618&type=2

Show SIM4 / tBLASTn alignment result. Query Sequence ID: NM 000059.1. Subject Sequence ID: ENSG00000139618. Subject Sequence type: 2.

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tbi.tw

::TBI Core Facility::

http://www.tbi.tw/tools/index.htm

BLAST Search at NCKU. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. This is a customized BLAST tool supported by NCKU bioinformatics center. BLAST against PDB protein databank at NTHU. BLAST against Motif/Domain database at NTHU. Search your protein or DNA sequence against Motif/Domain database. BLAST against customized database (the databases built by yourself). Software for two-channel cell-based RNAi data [NHRI]. Deep-sequencing small RNA analysis p...

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prosplicer.mbc.nctu.edu.tw

ProSpilcer

An Alternative Splicing Database based on Protein, mRNA, and EST Sequences. Is a putative alternative splicing database which stores alternative splicing information. These information are produced from variant proteins and expression patterns of a gene. Protein sequences, messenger RNA and expressed sequence tags (ESTs) provide valuable information about splice variants of genes. Suggested Browsers: IE 5.0 or above, and Netscape 4.79 or above). Gene Name, e.g., BRC). TTTCATTATTTAGAAATGTAAACATTTATTTAAAAG...

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