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Reproducible Research | Links and info about reproducible research

Links and info about reproducible research. An article about computational science in a scientific publication is not the scholarship itself, it is merely advertising of the scholarship. The actual scholarship is the complete software development environment and the complete set of instructions which generated the figures. This site hosts a blog. With a wide range of posts related to reproducibility. A description of how we make our research reproducible can be found on the How To. Because this type of s...

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Reproducible Research | Links and info about reproducible research | reproducibleresearch.net Reviews
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Links and info about reproducible research. An article about computational science in a scientific publication is not the scholarship itself, it is merely advertising of the scholarship. The actual scholarship is the complete software development environment and the complete set of instructions which generated the figures. This site hosts a blog. With a wide range of posts related to reproducibility. A description of how we make our research reproducible can be found on the How To. Because this type of s...
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Reproducible Research | Links and info about reproducible research | reproducibleresearch.net Reviews

https://reproducibleresearch.net

Links and info about reproducible research. An article about computational science in a scientific publication is not the scholarship itself, it is merely advertising of the scholarship. The actual scholarship is the complete software development environment and the complete set of instructions which generated the figures. This site hosts a blog. With a wide range of posts related to reproducibility. A description of how we make our research reproducible can be found on the How To. Because this type of s...

INTERNAL PAGES

reproducibleresearch.net reproducibleresearch.net
1

Reproducible material | Reproducible Research

http://reproducibleresearch.net/reproducible-material

Links and info about reproducible research. This page gives an overview of publications for which code and/or data are available. As our main focus is on signal and image processing, that is also the type of content to expect here. We will only add journals that are focused on these topics, in order to limit the scope of this list. Please feel free to e-mail any additions or corrections you may have. We would be happy to add them. Note also the following topical pages:. L Meylan and S. Süsstrunk, Hig...

2

Blog | Reproducible Research | Links and info about reproducible research

http://reproducibleresearch.net/blog

Links and info about reproducible research. Biden’s cancer bid exposes rift among researchers. Very interesting article here. This entry was posted in Uncategorized. February 5, 2016. Resources around data sharing and reproducibility. Some more interesting resources, including slide decks and/or presentation recordings:. Presentations at the Australian National Data Service. Harvard Purdue Data Management Symposium. June 16-17, 2015. This entry was posted in Uncategorized. June 29, 2015. October 20, 2014.

3

Troubleshooting Sweave | Reproducible Research

http://reproducibleresearch.net/troubleshooting-sweave

Links and info about reproducible research. Notes by John D. Cook based on his personal experience using Sweave on Windows XP using R version 2.4.1 and MiKTeX version 2.5. The purpose of Sweave is to make statistical analyses reproducible. However, technical difficulties can keep the Sweave document from being itself reproducible. Here are some things that could go wrong. Are in your path, you can save this code to a file, say. And process a file. Rexe -e "Sweave('%1.Rnw')" pdflatex.exe %1.tex. At the to...

4

Events | Reproducible Research

http://reproducibleresearch.net/events

Links and info about reproducible research. Upcoming events about reproducible research. March 8-10, 2017: Reproducibility of Research: Issues and Proposed Remedies. Workshop at the National Academy of Sciences, organized by David B. Allison, Stephen E. Fienberg, Richard Shiffrin and Victoria Stodden. 2007 – now: Presentations of the Australian National Data Service (ANDS). July 10, 2014: Workshop on Sustainable Software for Science: Practice and Experiences. Austin, USA), held in conjunction with SciPy.

5

Bibliography | Reproducible Research

http://reproducibleresearch.net/bibliography

Links and info about reproducible research. D E Knuth, Literate Programming. The Computer Journal, vol. 27, no. 2, pp. 97 111, May 1984. K Price, Anything You Can Do, I Can Do Better (No You Can’t)…. Computer Vision, Graphics, and Image Processing, Vol. 36, pp. 387-391, 1986, doi:10.1016/0734-189X(86)90083-6. J Claerbout, Electronic documents give reproducible research a new meaning. In Proc. 62nd Ann. Int. Meeting of the Soc. of Exploration Geophysics, 1992, pp. 601 604. I Vlad, Reproducibility in compu...

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replicability.tau.ac.il replicability.tau.ac.il

Replicability vs Reproducibility - Replicability Research Group

http://www.replicability.tau.ac.il/index.php/replicability-in-science/replicability-vs-reproducibility.html

Faculty of Exact Science. School of Mathematical Sciences. Department of Statistics and Operations Research. Replicability as a Central Dogma in Science. This note discusses terminology, but it isn’t just semantic. It is important to make a meaningful distinction between the two terms. Initiative reports about the ‘. Studies and not about the reproducible ones. And the Reproducible Research Net. CIRM - Mathematical Methods of Modern Statistics July 2017. IBANGS Meeting May 2017. Stanford researchers unco...

cvxr.com cvxr.com

Paper | CVX Research, Inc.

http://cvxr.com/tfocs/paper

CVX Research, Inc. Templates for convex cone problems with applications to sparse signal recovery. PDF file, 1.9 MB). Stanford University Technical Report, September 2010. Published in Mathematical Programming Computation. Volume 3, Number 3, August 2011. In the spirt of reproducible research. We provide the examples used in the paper. Zip file, 9.7 MB), which allows one to reproduce the figures in the paper. You must have the TFOCS package installed. To run the examples. October 9th, 2012.

harlan.harris.name harlan.harris.name

Professional | Somethink to Chew On

http://www.harlan.harris.name/category/professional

Somethink to Chew On. The blog of Harlan Harris. Posts not about my personal life. Patterns for Connecting Predictive Models to Software Products. This was originally published on Medium on June 21st, 2016. You’re a data scientist, and you’ve got a predictive model great work! Continue reading →. This entry was posted in Professional. June 21, 2016. Simulating Rent Stabilization Policy at the National Day of Civic Hacking. This post was originally published on Medium on June 5, 2016. Yesterday was the 20...

harlan.harris.name harlan.harris.name

programming | Somethink to Chew On

http://www.harlan.harris.name/tag/programming

Somethink to Chew On. The blog of Harlan Harris. The below is a public version of a post originally posted on an internal blog at the Education Advisory Board. EAB), my current employer. We don’t yet have a public tech blog, but I got permission to edit and post it here, along with the referenced code. There’s a relatively new theme in the scientific research community called. 8220; The R. And S) statistical programming languages have supported LaTeX. A researcher “weaves” chunks of text and ...This is g...

tfocs.stanford.edu tfocs.stanford.edu

Paper | CVX Research, Inc.

http://tfocs.stanford.edu/paper

CVX Research, Inc. Templates for convex cone problems with applications to sparse signal recovery. PDF file, 1.9 MB). Stanford University Technical Report, September 2010. Published in Mathematical Programming Computation. Volume 3, Number 3, August 2011. In the spirt of reproducible research. We provide the examples used in the paper. Zip file, 9.7 MB), which allows one to reproduce the figures in the paper. You must have the TFOCS package installed. To run the examples. October 9th, 2012.

harlan.harris.name harlan.harris.name

analytics | Somethink to Chew On

http://www.harlan.harris.name/tag/analytics

Somethink to Chew On. The blog of Harlan Harris. Patterns for Connecting Predictive Models to Software Products. This was originally published on Medium on June 21st, 2016. You’re a data scientist, and you’ve got a predictive model great work! Continue reading →. This entry was posted in Professional. June 21, 2016. The below is a public version of a post originally posted on an internal blog at the Education Advisory Board. EAB), my current employer. We don’t yet have a public tech blog, but I...Data Sc...

wiki.uio.no wiki.uio.no

OCBE Wiki Pages - med.imb.ocbe

https://wiki.uio.no/med/imb/ocbe

From med.imb.ocbe. Redirected from Main Page. Further OCBE Wiki pages. Introductory course in SPSS (in Norwegian). The aim of these Wiki pages is to provide a list of recommended resources (at OCBE, UiO and online) to help you get started with your data analysis projects. We are not aiming to provide an exhaustive list of all available online resources. Rather, we want to be a guide in the online jungle by pointing out good starting points for specific research questions. Guidelines for clinical research:.

ahay.org ahay.org

Reproducibility - Madagascar

http://www.ahay.org/wiki/Reproducibility

Written by I. Vlad). At the end of the day, reproducibility is what separates science from superstition" (S. Fomel). Making a numerical experiment reproducible means filing and documenting all data, source code and scripts used to produce the experimental results (figures, tables, graphs, etc). The filing and documentation is done such that the same results can be reproduced by an independent reviewer. In numerically-intensive sciences, it is possible to not only describe. The "legacy maintenance" pitfall.

icip2011.org icip2011.org

ICIP 2011 | Main / RoundTable

http://www.icip2011.org/index.php/Main/RoundTable

REPRODUCIBLE ARTICLES IN IMAGE PROCESSING. Wednesday 14, 14:00-15:00. Organized by the innovation co-chairs:. Jean-Luc DUGELAY (EURECOM, Sophia Antipolis). Moncef GABBOUJ (Tampere University of Technology). The invited panelists include:. Thrasos Pappas (Northwestern Univ.). Thomas Sikora (Technical University of Berlin). Edward Delp (Purdue University). The round table is open to all ICIP 2011 attendees, so you are cordially invited to attend. Thrasos Pappas (Northwestern Univ.). Edward J. Delp.

harlan.harris.name harlan.harris.name

reporting | Somethink to Chew On

http://www.harlan.harris.name/tag/reporting

Somethink to Chew On. The blog of Harlan Harris. The below is a public version of a post originally posted on an internal blog at the Education Advisory Board. EAB), my current employer. We don’t yet have a public tech blog, but I got permission to edit and post it here, along with the referenced code. There’s a relatively new theme in the scientific research community called. 8220; The R. And S) statistical programming languages have supported LaTeX. A researcher “weaves” chunks of text and ...This is g...

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Reproducible Research | Links and info about reproducible research

Links and info about reproducible research. An article about computational science in a scientific publication is not the scholarship itself, it is merely advertising of the scholarship. The actual scholarship is the complete software development environment and the complete set of instructions which generated the figures. This site hosts a blog. With a wide range of posts related to reproducibility. A description of how we make our research reproducible can be found on the How To. Because this type of s...

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Reproducible Scientific Computing

Tuesday, March 1, 2016. On "Repeatability in Computer Systems Research". Kudos to University of Arizona's Christian Collberg. And Todd A. Proebsting. For their article on Repeatability in computer systems research. Appearing in this month's Communications of the ACM. It is wonderful to see a prominent call for our field to "fund repeatability engineering and reward commitments to sharing research artifacts.". As one might suspect, the article reports depressing discoveries about the level of reproducibii...

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RSWiki

What scientists are doing about reproducibility. Infrastructure to Create Provenance-Rich Papers. Video: Editing an executable paper written using LaTeX and VisTrails. Video: Exploring a Web-hosted paper using server-based computation. Tutorial: Editing an executable paper using VisTrails and LaTeX extensions. Workshop on Reproducibility in Science - May 1st, 2013. Workshop on Reproducibility in Science - May 29th, 2013. A new version of ReproZip is now available at our website. Check out our paper where...