rna.bgsu.edu

BGSU RNA Bioinformatics Lab

BGSU RNA Bioinformatics Lab. RNA 3D Motif Atlas. RNA Base Phosphate Catalog. RNA Base Triple Database. BGSU RNA Structural Bioinformatics. Is a new resource, which contains:. RNA 3D Motif Atlas. A representative collection of RNA 3D motifs. Of RNA-containing 3D structures. For all atomic-resolution RNA 3D structures deposited in PDB/NDB, including FR3D basepairing and base-stacking annotations and internal, hairpin, and 3-way junction loops. 2015-02-13: Upgrading RNA 3D Hub. Introduction to RNA 3D Hub.

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BGSU RNA Bioinformatics Lab | rna.bgsu.edu Reviews

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BGSU RNA Bioinformatics Lab. RNA 3D Motif Atlas. RNA Base Phosphate Catalog. RNA Base Triple Database. BGSU RNA Structural Bioinformatics. Is a new resource, which contains:. RNA 3D Motif Atlas. A representative collection of RNA 3D motifs. Of RNA-containing 3D structures. For all atomic-resolution RNA 3D structures deposited in PDB/NDB, including FR3D basepairing and base-stacking annotations and internal, hairpin, and 3-way junction loops. 2015-02-13: Upgrading RNA 3D Hub. Introduction to RNA 3D Hub.

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1 software

2 r3dalign

3 web applications

4 webfr3d

5 geometric webfr3d search

6 symbolic webfr3d search

7 webr3dalign

8 webr3dalign server

9 databases

10 rna 3d hub

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software,r3dalign,web applications,webfr3d,geometric webfr3d search,symbolic webfr3d search,webr3dalign,webr3dalign server,databases,rna 3d hub,structure atlas,non redundant lists,loop atlas,rna basepair catalog,about us,publications,news,visit ndb site

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BGSU RNA Bioinformatics Lab | rna.bgsu.edu Reviews

https://rna.bgsu.edu

BGSU RNA Bioinformatics Lab. RNA 3D Motif Atlas. RNA Base Phosphate Catalog. RNA Base Triple Database. BGSU RNA Structural Bioinformatics. Is a new resource, which contains:. RNA 3D Motif Atlas. A representative collection of RNA 3D motifs. Of RNA-containing 3D structures. For all atomic-resolution RNA 3D structures deposited in PDB/NDB, including FR3D basepairing and base-stacking annotations and internal, hairpin, and 3-way junction loops. 2015-02-13: Upgrading RNA 3D Hub. Introduction to RNA 3D Hub.

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rna.bgsu.edu

1

R3D Align

http://rna.bgsu.edu/r3dalign

Gallery of Featured Alignments. RNA 3D Motif Atlas. RNA 3D Hub Home. Is a web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures. Based on the method described by Rahrig et al., 2010. The webserver is described in Rahrig et al., 2013. And don't hesitate to contact us. If you have questions. R3D Align is integrated with the Non-redundant Lists. Where all RNA 3D structures are organized into. We are transitioning to mmCIF files. Or upload a file.

2

Symbolic FR3D

http://rna.bgsu.edu/webfr3d/symbolic.php

All Hairpin Loops in 3I8I. All Tetraloops in 3I8I. All Internal Loops in 3I8I. Triple Sheared Internal Loop. CWW tHW Base Triples in 3I8I. In a new window. Learn more at RNA 3D Hub. Click an element to view help.

3

JAR3D | Home

http://rna.bgsu.edu/jar3d

BGSU RNA Bioinformatics Lab. RNA 3D Motif Atlas. RNA Base Phosphate Catalog. RNA Base Triple Database. Scoring RNA loop sequences against known 3D motifs Tutorial. Single sequence, one loop. Multiple sequences, one loop. Multiple sequences, one loop (fasta). Single sequence, many loops, with secondary structure. Single sequence, many loops, with secondary structure (fasta). Multiple sequences, many loops, with secondary structure. Multiple sequences, many loops, with secondary structure (fasta). Inferrin...

4

RNA Structure Atlas

http://rna.bgsu.edu/rna3dhub/pdb

RNA 3D Motif Atlas. RNA Base Triple Database. RNA Base Phosphate Catalog. Provides annotations of base-pairing, -stacking, and -backbone interactions computed by FR3D. Extracts internal, hairpin and 3-way junction loops and annotates them with motifs from the RNA 3D Motif Atlas. Organizes redundant structures into non-redundant lists. We are upgrading RNA 3D Hub. To include new RNA 3D structures distributed in mmCIF format. Follow us on Twitter. To hear when the updated version becomes available.

5

RNA 3D Motif Atlas

http://rna.bgsu.edu/rna3dhub/motifs

RNA 3D Motif Atlas. RNA Base Triple Database. RNA Base Phosphate Catalog. RNA 3D Motif Atlas. Is a comprehensive and representative collection of internal and hairpin loop RNA 3D motifs extracted from the Non-redundant lists. Of RNA 3D structures. We are upgrading RNA 3D Hub. To include new RNA 3D structures distributed in mmCIF format. Follow us on Twitter. To hear when the updated version becomes available. Current version: 1.18. Current version: 1.18. If you use this resource, please cite:.

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BGSU RNA Bioinformatics Lab. RNA 3D Motif Atlas. RNA Base Phosphate Catalog. RNA Base Triple Database. BGSU RNA Structural Bioinformatics. Is a new resource, which contains:. RNA 3D Motif Atlas. A representative collection of RNA 3D motifs. Of RNA-containing 3D structures. For all atomic-resolution RNA 3D structures deposited in PDB/NDB, including FR3D basepairing and base-stacking annotations and internal, hairpin, and 3-way junction loops. 2015-02-13: Upgrading RNA 3D Hub. Introduction to RNA 3D Hub.

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