lepbase.org
Finding help | lepbase.org
http://lepbase.org/finding-help
Added by Richard Challis on July 22nd 2016. We’re adding some tutorials to make Lepbase easier to use. If you don’t see what you are looking for below then please get in touch. To suggest a topic for us to add or check out the official Ensembl.
lepbase.org
blog | lepbase.org
http://lepbase.org/category/blog?tag=blast
Added by Richard Challis on February 13th 2016. Lepbase release 2 went live on 13th February 2016 with 21 annotated assemblies across 17 species. This release adds six additional species:. Papilio machaon Pap ma 1.0. Papilio xuthus Pap xu 1.0. And Pxut 1.0. Plus updated assemblies/annotations for three of the species in release 1:. Bicyclus anynana v1.2. All of these species (together with unannotated Heliconiine DISCOVAR assemblies) are available on our ensembl. Is powered by SequenceServer. Blastable d...
reefgenomics.org
SequenceServer: Custom BLAST Server
http://reefgenomics.org/blast
SequenceServer 1.0.2. Drop query sequence file here. One file at a time please. Too big a file. Can only do less than 10 MB. Only FASTA files please. Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. Aiptasia genome (Baumgarten, 2015). Stylissa carteri genome (Ryu, 2014). Stylophora pistillata genome (Li, Sep 2014). Symbiodinium aenigmaticum transcriptome (Parkinson, 2016). Symbiodinium microadriaticum genome (Li, Sep 2014). Matrix String Scoring m...
baihua0.blogspot.com
Everyday Metamorphosis: Bioinformatics, local blast and BioEdit
http://baihua0.blogspot.com/2008/05/bioinformatics-local-blast-and-bioedit.html
Living organisms all have their own survival strategies. Metamorphosis appears to be a distinct feature that makes insects the most diverse group of animals in our planet. Wednesday, May 28, 2008. Bioinformatics, local blast and BioEdit. Bioinformatics for me is a wonderful tool that make my research life easier Just like you cannot live in today's world without internet. Thank you Dr. Tan! Without you I will not know the exist of BioEdit and still have a miserable life. Dear Hua Bai,. ISI Web of Knowled...
antgenomes.org
Fourmidable: BLAST ant genomes, proteomes, and transcriptomes.
http://www.antgenomes.org/blast
Drop query sequence file here. One file at a time please. Too big a file. Can only do less than 10 MB. Only FASTA files please. Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. Acromyrmex echinatior genome 2.0. Acromyrmex echinatior predicted transcripts 3.8. Atta cephalotes predicted transcripts 1.2. Camponotus floridanus genome 3.3. Camponotus floridanus predicted transcripts 3.3. Camponotus floridanus transcriptome (assembled from RNA). Raw una...
culture-bioinformatics.org
Culture LCARS Interface 2.0
http://www.culture-bioinformatics.org/blast.shtml
CULTURE Local BLAST Server. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. GUI SequenceServer is a modern and maintained web-enabled front-end for the NCBI BLAST. CULTURE Home CULTURE Home.
culture-bioinformatics.org
Culture LCARS Interface
http://www.culture-bioinformatics.org/about.shtml
About the CULTURE IV Bioinformatics Server. CULTURE is a personal Bioinformatics server built on Ubuntu. 1604 Culture currently offers local BLAST analysis and EMBOSS. All databases are maintained locally and are updated periodically. CULTURE IV is a Liquid-Cooled AMD FX-8350 8-core processor running at 4Mhz, with 16Gb RAM. Click here for current operational status. December 2013 - R-Studio Server. R-Studio was installed on CULTURE allowing authenticated users to run R. Scripts. The ATLAS BLAS. BLAST is ...
richardslab.exeter.ac.uk
BLAST Servers | The Richards' Lab
http://richardslab.exeter.ac.uk/blast-server
The Richards' Lab. The Lab Website of Thomas Richards. Paramecium Bursaria – Chlorella *. All the genomes are available to BLAST using SequenceServer. 454 V4 and V9 Regions. Theme: Accelerate by ThemeGrill.
plantgenomics.snu.ac.kr
SequenceServer: Custom BLAST Server
http://plantgenomics.snu.ac.kr/sequenceserver
Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. Vradi ver6.fa.cds.primary.fasta. Adzuki.ver3.cds.fa. Adzuki.ver3.ref.fa. Adzuki.ver3.ref.fa.cor.fa. Vradi ver6.fa.cds.primary.fasta.pepshorten.fa. Adzuki.ver3.pep.fa. Evalue Real Expectation value (E) threshold for saving hits Default = '10'. Word size Integer, =2 Word size for wordfinder algorithm. Gapopen Integer Cost to open a gap. Gapextend Integer Cost to extend a gap. Restrict search or results.
wallabase.org
SequenceServer: Custom BLAST Server
https://wallabase.org/blast
SequenceServer 1.0.4. Drop query sequence file here. One file at a time please. Too big a file. Can only do less than 10 MB. Only FASTA files please. Detected: mixed nucleotide and protein sequences. We can't handle that. Please try one sequence at a time. All ESTs from NCBI. Wallaby Coding Sequences v3.1. Wallaby Genes v3.1. Wallaby Transcripts v3.1. Wallaby Proteins v3.1. Run BLAST locally with Sequenceserver. Please Cite: Priyam, Woodcroft, Rai and Wurm, SequenceServer. Lcase masking Use lower case fi...
