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BioGRID | Database of Protein, Chemical, and Genetic Interactions

BioGRID Is An Online Interaction Respository With Data Compiled Through Comprehensive Curation Efforts. Our Current Index Contains 796,767 Raw Protein And Genetic Interactions From Major Model Organism Species.

http://www.thebiogrid.org/

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BioGRID | Database of Protein, Chemical, and Genetic Interactions | thebiogrid.org Reviews
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BioGRID Is An Online Interaction Respository With Data Compiled Through Comprehensive Curation Efforts. Our Current Index Contains 796,767 Raw Protein And Genetic Interactions From Major Model Organism Species.
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BioGRID | Database of Protein, Chemical, and Genetic Interactions | thebiogrid.org Reviews

https://thebiogrid.org

BioGRID Is An Online Interaction Respository With Data Compiled Through Comprehensive Curation Efforts. Our Current Index Contains 796,767 Raw Protein And Genetic Interactions From Major Model Organism Species.

SUBDOMAINS

osprey.thebiogrid.org osprey.thebiogrid.org

Osprey: Network Visualization System

Osprey: Network Visualization System. Osprey is a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO). Annotated interaction data maintained by the BioGRID. Osprey is developed by the TyersLab. And is a part of the BioGRID. Family of software. It utilizes both MySQL. To operate and is compatible with Windows. And supported by the National Institutes of Health. Canadian Institutes of Health Research.

wiki.thebiogrid.org wiki.thebiogrid.org

Help and Support Resources | BioGRID

Help and Support Resources. Help and Support Resources. Help and Support Resources. Search Results and Layout. Curation Methodologies and Guides. Contributing to the BioGRID. Help and Support Resources. And we will answer your question directly. Our site is constantly changing so please check back often for possible changes. Search Results and Layout. Search results layout - A complete breakdown of our results pages. Supported identifiers for searches. Search tips - How to better find what you want.

webservice.thebiogrid.org webservice.thebiogrid.org

BioGRID WebService

Welcome to the BioGRID Webservice. To begin using this service, you must first register for an application key. The key is free and we use this information ONLY. For the purposes of notifying you in the event of a problem with our service. Please fill in the following form accurately.

INTERNAL PAGES

thebiogrid.org thebiogrid.org
1

Database of Protein, Chemical, and Genetic Interactions | BioGRID

http://thebiogrid.org/news/154

BioGRID Version 3.4.126 Released. 8216;s curated set of physical and genetic interactions has been updated to include interactions, chemical associations, and post-translational modifications (PTM) from 54,430. Publications. These additions bring our total number of non-redundant interactions to 576,636. Raw interactions to 788,169. Non-redundant chemical associations to 11,329. Raw chemical associations to 27,034. Unique PTM Sites to 19,981. And Un-Assigned PTMs to 18,578. July 1, 2015 - 7:58 pm.

2

DIG1 (YPL049C) Result Summary | BioGRID

http://thebiogrid.org/36131/protein/saccharomyces-cerevisiae/dig1.html

Gene / Identifier Search. Human Immunodeficiency Virus 1. Emericella nidulans (FGSC A4). Human Immunodeficiency Virus 1. Human Immunodeficiency Virus 2. Streptococcus pneumoniae (Hungary 19A-6). RST1, L000003122, YPL049C. MAP kinase-responsive inhibitor of the Ste12p transcription factor; involved in the regulation of mating-specific genes and the invasive growth pathway; related regulators Dig1p and Dig2p bind to Ste12p; DIG1 has a paralog, DIG2, that arose from the whole genome duplication.

3

SUMO1 (OK/SW-cl.43) Result Summary | BioGRID

http://thebiogrid.org/113188/protein/homo-sapiens/sumo1.html

Gene / Identifier Search. Human Immunodeficiency Virus 1. Emericella nidulans (FGSC A4). Human Immunodeficiency Virus 1. Human Immunodeficiency Virus 2. Streptococcus pneumoniae (Hungary 19A-6). DAP1, GMP1, OFC10, PIC1, SENP2, SMT3, SMT3C, SMT3H3, UBL1, OK/SW-cl.43. Small ubiquitin-like modifier 1. Gene Ontology Biological Process. Cellular protein metabolic process. Negative regulation of DNA binding. Negative regulation of sequence-specific DNA binding transcription factor activity.

4

baz (Dmel_CG5055) Result Summary | BioGRID

http://thebiogrid.org/59031/table/drosophila-melanogaster/baz.html

Gene / Identifier Search. Human Immunodeficiency Virus 1. Emericella nidulans (FGSC A4). Human Immunodeficiency Virus 1. Human Immunodeficiency Virus 2. Streptococcus pneumoniae (Hungary 19A-6). Baz/Par-3, Baz/Par3, Bazooka, CG5055, D-Par3, Dmel CG5055, PAR-3, PAR3, dPar-3, l(1)G0484, Dmel CG5055. Gene Ontology Biological Process. Asymmetric protein localization involved in cell fate determination. Border follicle cell delamination. Border follicle cell migration. Morphogenesis of a polarized epithelium.

5

DAD1 - FUS1 Interaction Summary | BioGRID

http://thebiogrid.org/interaction/783033/DAD1-FUS1.html

Gene / Identifier Search. Human Immunodeficiency Virus 1. Emericella nidulans (FGSC A4). Human Immunodeficiency Virus 1. Human Immunodeficiency Virus 2. Streptococcus pneumoniae (Hungary 19A-6). DASH complex subunit Dad1. Gene Ontology Biological Process. Gene Ontology Cellular Component. Condensed chromosome, centromeric region. Mitotic spindle pole body. Gene Ontology Biological Process. Actin filament bundle assembly. Plasma membrane fusion involved in cytogamy. Gene Ontology Cellular Component. An Ep...

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LINKS TO THIS WEBSITE

wiki.thebiogrid.org wiki.thebiogrid.org

BioGRID Architecture and Data Model | BioGRID

http://wiki.thebiogrid.org/doku.php/architecture

BioGRID Architecture and Data Model. Help and Support Resources. BioGRID Architecture and Data Model. BioGRID Architecture and Data Model. The BioGRID database architecture consists of three distinct components: (i) the Core. Iii) the Interaction Management System (IMS). All of the BioGRID databases use MySQL 5.1. We chose MySQL as the database because it is freely available, platform independant, and easy to install and maintain without sacrificing performance or features.

creative-biomics.com creative-biomics.com

Creative Biomics

http://www.creative-biomics.com/resource.asp?classid=15

Documents and Tutorials. Documents and Tutorials. GenBank: National Center for Biotechnology Information. EMBL Nucleotide Sequence Database. DDBJ: DNA Data Bank of Japan. UniProt: United Protein Databases. PIR Protein Sequence Database. Gene Expression Omnibus (GEO, NCBI). READ (RIKEN cDNA Expression Array Database). Standford Microarray Database (SMD). Pathway and network databases. KEGG:Kyoto Encyclopedia of Genes and Genomes. PID: NCI-Nature Pathway Interaction Database.

seq.yeastgenome.org seq.yeastgenome.org

Download Data : Saccharomyces Genome Database

http://seq.yeastgenome.org/download-data

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. Data at SGD can be downloaded in multiple ways:. A powerful search and retrieval tool that allows for sophisticated queries and download in customizable user-defined formats. From individual pages. For example, via the 'Download Data' link on the phenotypes or interactions pages. How to Cite SGD. Find a yeast lab.

seq.yeastgenome.org seq.yeastgenome.org

SGD Suggestions and Questions

http://seq.yeastgenome.org/cgi-bin/suggestion

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. SGD Suggestions and Questions. Please fill in your name and e-mail address to send mail to a curator. Please enter your message here:. Please verify the text in the image:. Send me a copy. Stanford University, Stanford, CA 94305.

yeastgenome.org yeastgenome.org

SGD Gene Ontology Slim Mapper

http://www.yeastgenome.org/cgi-bin/GO/goSlimMapper.pl

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. SGD Gene Ontology Slim Mapper. The GO Slim Mapper maps annotations of a group of genes to more general terms and/or bins them into broad categories, ie. GO Slim. Three GO Slim sets are available at SGD:. Macromolecular complex terms: protein complex terms from the Cellular Component ontology. For information about...

seq.yeastgenome.org seq.yeastgenome.org

About : Saccharomyces Genome Database

http://seq.yeastgenome.org/about

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. What are yeast, anyway? Get a general introduction to yeast and its uses on our " What are yeast? Page, found in the SGD Community Wiki. Genome Database (SGD, http:/ www.yeastgenome.org. Is the community resource for the budding yeast. Project Funding and Location. How to Cite SGD. Find a yeast lab. Yeast “M...

seq.yeastgenome.org seq.yeastgenome.org

S. cerevisiae WU-BLAST2 Search | SGD

http://seq.yeastgenome.org/blast-sgd

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. Stanford University, Stanford, CA 94305.

seq.yeastgenome.org seq.yeastgenome.org

Site Map : Saccharomyces Genome Database

http://seq.yeastgenome.org/site-map

Thanks for using our new search. Tell us what you think. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical and Genetic Maps. The SGD site map provides links to the major resources and tools in SGD. Gene / Sequence Resources. GO Slim Mapping File. BioGRID (U. Toronto). Add or Update Info. Find a Yeast Lab. Submit a Gene Registration. Physical & Genetic Maps. How to Cite SGD. Find a yeast lab. Gene / Sequence Resources. Add or Update Info.

wallingfordlab.org wallingfordlab.org

Links - WALLINGFORD LAB

http://www.wallingfordlab.org/links.html

Dept of Molecular Biosciences, University of Texas at Austin. Web of Science (via UT Libraries). She blinded me with science. Journal of Cell Biology. Indeed, things show up much more clearly in frogs. . .". Letter to Giovanni Borelli, 1661.

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Welcome to the Biological General Repository for Interaction Datasets. BioGRID is an interaction repository with data compiled through comprehensive curation efforts. Our current index is version 3.4.127. And searches 54,676. Publications for 796,767. Protein and genetic interactions, 27,034. Chemical associations and 38,559. Post translational modifications from major model organism species. All data are freely. Provided via our search index and available for download in standardized formats. Find out h...

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