thegenomefactory.blogspot.com

The Genome Factory

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 25 April 2015. Flashback to 2008 - the Illumina GA "classic". Throughout my bioinformatics career I have been fortunate to be around early adopters of the latest sequencing technologies. Back in 2008 I worked in the Dept of Microbiology at Monash University who ran the Micromon. Sequencing service. Micromon purchased Australia's first. S N sequence.txt. Many of...

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The Genome Factory | thegenomefactory.blogspot.com Reviews

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Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 25 April 2015. Flashback to 2008 - the Illumina GA classic. Throughout my bioinformatics career I have been fortunate to be around early adopters of the latest sequencing technologies. Back in 2008 I worked in the Dept of Microbiology at Monash University who ran the Micromon. Sequencing service. Micromon purchased Australia's first. S N sequence.txt. Many of...

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2 introduction

3 illumina genome analyzer

4 the data

5 where

6 historical aside

7 conclusion

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The Genome Factory | thegenomefactory.blogspot.com Reviews

https://thegenomefactory.blogspot.com

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 25 April 2015. Flashback to 2008 - the Illumina GA "classic". Throughout my bioinformatics career I have been fortunate to be around early adopters of the latest sequencing technologies. Back in 2008 I worked in the Dept of Microbiology at Monash University who ran the Micromon. Sequencing service. Micromon purchased Australia's first. S N sequence.txt. Many of...

INTERNAL PAGES

thegenomefactory.blogspot.com

1

The Genome Factory: April 2015

http://thegenomefactory.blogspot.com/2015_04_01_archive.html

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 25 April 2015. Flashback to 2008 - the Illumina GA "classic". Throughout my bioinformatics career I have been fortunate to be around early adopters of the latest sequencing technologies. Back in 2008 I worked in the Dept of Microbiology at Monash University who ran the Micromon. Sequencing service. Micromon purchased Australia's first. S N sequence.txt. Many of...

2

The Genome Factory: Using Velvet with mate-pair sequences

http://thegenomefactory.blogspot.com/2012/09/using-velvet-with-mate-pair-sequences.html

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 8 September 2012. Using Velvet with mate-pair sequences. Illumina sequencing instruments (HiSeq, MiSeq, Genome Analyzer) can produce three main types of reads when sequencing genomic DNA:. Each "read" is a single sequence from one end of a DNA fragment. The fragment is usually 200-800bp long, with the amount being read can be chosen between 50 and 250 bp. Optio...

3

The Genome Factory: Paired-end read confusion - library, fragment or insert size?

http://thegenomefactory.blogspot.com/2013/08/paired-end-read-confusion-library.html

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Sunday, 25 August 2013. Paired-end read confusion - library, fragment or insert size? When you do an Illumina sequencing run, you need to choose between single-end (SE) or paired-end (PE) sequencing. When sequencing, we chop up our DNA into small fragments, and then ligate some adaptors. Then, for SE, we only sequence. End of a DNA fragment. For PE, we sequence. R1 and R...

4

The Genome Factory: October 2012

http://thegenomefactory.blogspot.com/2012_10_01_archive.html

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 20 October 2012. The joy of academic conference spam. I got a classic example today:. To: torsten.seemann@monash.spam.edu. Umm, you spelled my surname incorrectly. Sorry for misleading you with the correct spelling in my email address, websites, blog, and Twitter account. Eg CA = California or Canada? DDW 2013 Abstract Submission Site:. Hmm, you still haven't e...

5

The Genome Factory: July 2012

http://thegenomefactory.blogspot.com/2012_07_01_archive.html

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Tuesday, 24 July 2012. Navigating microbial genomes on the NCBI FTP site. If you are a bioinformatician working in microbial genomics, then you should know this URL:. Ftp:/ ftp.ncbi.nih.gov/genomes/. Ftp:/ ftp.ncbi.nih.gov/genomes/Bacteria/. Ftp:/ ftp.ncbi.nih.gov/genomes/Bacteria DRAFT/. Ftp:/ ftp.ncbi.nih.gov/genomes/Plasmids/. Because it's a lovely sounding alliterati...

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richardcaseyhpc.com

Paired-End Reads |

http://richardcaseyhpc.com/paired-end-reads

On June 18, 2015. I like to give a shout out to fellow bloggers who present especially lucid, insightful, or even provocative posts. Torsten Seemann at The Genome Factory. Has written a short but clear description of Illumina paired-end reads. Richard is a software project manager specializing in High Performance Computing (HPC) for Next Generation Sequencing (NGS). You Might Also Like. Genome Assembly without the RAM. March 22, 2016. March 21, 2016. December 25, 2015. July 20, 2015. June 18, 2015.

nextgenseq.blogspot.com

Next-Gen Sequencing

http://nextgenseq.blogspot.com/2015/07/i-am-writing-new-lectures-and.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Jul 29, 2015. I am writing new lectures and organizing a lot of teaching material to teach 4 (! Https:/ drive.google.com/open? We are also planning to make Screencast type videos of most of the lectures, which get dumped on YouTube. I will try to find some sensible way of organizing them and sharing via this NGS blog. Subscribe to: Post Comments (Atom). View my complete profile. Accurate...

nextgenseq.blogspot.com

Next-Gen Sequencing: New 'Next-Gen Seq 2' book is at the printer

http://nextgenseq.blogspot.com/2015/05/new-next-gen-seq-2-book-is-at-printer.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 28, 2015. New 'Next-Gen Seq 2' book is at the printer. The second edition of the Next-Generation Sequencing Informatics. Book (that I edit) is at the printer and available for pre-order at Cold Spring Harbor Press. We think it will ship on June 30th, maybe a bit sooner. Here is the official publication blurb:. Next-Generation DNA Sequencing Bioinformatics, Second edition,. Addresses ...

nextgenseq.blogspot.com

Next-Gen Sequencing: May 2015

http://nextgenseq.blogspot.com/2015_05_01_archive.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. May 28, 2015. New 'Next-Gen Seq 2' book is at the printer. The second edition of the Next-Generation Sequencing Informatics. Book (that I edit) is at the printer and available for pre-order at Cold Spring Harbor Press. We think it will ship on June 30th, maybe a bit sooner. Here is the official publication blurb:. Next-Generation DNA Sequencing Bioinformatics, Second edition,. Addresses ...

nextgenseq.blogspot.com

Next-Gen Sequencing: October 2013

http://nextgenseq.blogspot.com/2013_10_01_archive.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Oct 26, 2013. A bit more on genome annotation. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). A bit more on genome annotation. List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. TimeSeq – detect biologically relevant DE genes and gene sets in time course RNA-Seq data. A group o...

nextgenseq.blogspot.com

Next-Gen Sequencing: Password hell

http://nextgenseq.blogspot.com/2015/02/password-hell.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Feb 9, 2015. Follow instructions very carefully or your helpful technology tools will gang up against you. Happy Ice Storm Day from New York. May 16, 2015, 12:34:00 PM. Subscribe to: Post Comments (Atom). View my complete profile. Vendors (NG Seq machines). List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. MIRA for Early Stage In...

nextgenseq.blogspot.com

Next-Gen Sequencing: February 2015

http://nextgenseq.blogspot.com/2015_02_01_archive.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Feb 9, 2015. Follow instructions very carefully or your helpful technology tools will gang up against you. Happy Ice Storm Day from New York. Links to this post. Subscribe to: Posts (Atom). View my complete profile. Vendors (NG Seq machines). List of Blogs relevant to NG Seq. The Tree of Life. Viruses viruses viruses viruses viruses viruses viruses. A New Era for MassGenomics. A group of...

nextgenseq.blogspot.com

Next-Gen Sequencing: November 2013

http://nextgenseq.blogspot.com/2013_11_01_archive.html

A working guide to the rapidly developing world of Next-Generation DNA sequencing, with an emphasis on bioinformatics. Nov 16, 2013. Dr Evan Eichler speaks about genomic structural variation. Yesterday I attended an excellent symposium on genomic structural variation organized by the Simons Foundation. For me, The highlight of the afternoon was a talk by Evan Eichler. From the University of Washington. For example the SRGAP2 locus has 4 isoforms. These deletions and duplications may be quite large and ty...

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thegenome.net

thegenome.net - This website is for sale! - Genome Resources and Information.

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thegenome.org - This website is for sale! - Genomics Resources and Information.

The owner of thegenome.org. Is offering it for sale for an asking price of 2400 USD! This page provided to the domain owner free. By Sedo's Domain Parking. Disclaimer: Domain owner and Sedo maintain no relationship with third party advertisers. Reference to any specific service or trade mark is not controlled by Sedo or domain owner and does not constitute or imply its association, endorsement or recommendation.

thegenomecoaching.in

The Genome Coaching : Home

Get Free Update Daily. We at the genome coaching center keep no stone upturned for our students success ranging from class room teaching to e-learning videos. We believe that hard work conquers all. The faculty members at the genome coaching institute are the best of the best. All faculty members are CSIR-NET-Qualified and together makes a unique winning team. The classes are enough to sprout the seed of knowledge and develop that never dying hunger for success in oneself. Student Working for PhD. He has...

thegenomefactory.blogspot.com

The Genome Factory

Bioinformatics tips, tricks, tools and commentary with a microbial genomics bent. Written by Torsten Seemann from Melbourne, Australia. Saturday, 25 April 2015. Flashback to 2008 - the Illumina GA "classic". Throughout my bioinformatics career I have been fortunate to be around early adopters of the latest sequencing technologies. Back in 2008 I worked in the Dept of Microbiology at Monash University who ran the Micromon. Sequencing service. Micromon purchased Australia's first. S N sequence.txt. Many of...