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theory.cs.ucr.edu

Algorithms and Computational Biology Lab

We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.

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Algorithms and Computational Biology Lab | theory.cs.ucr.edu Reviews
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We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.
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5 approximation algorithms
6 on line algorithms
7 computational geometry
8 graph drawing
9 information retrieval
10 computational complexity
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Algorithms and Computational Biology Lab | theory.cs.ucr.edu Reviews

https://theory.cs.ucr.edu

We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.

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theory.cs.ucr.edu theory.cs.ucr.edu
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Algorithms and Computational Biology Lab

http://theory.cs.ucr.edu/index.html

We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.

2

Directions - Algorithms and Computational Biology Lab

http://theory.cs.ucr.edu/directions.html

Algorithms and Computational Biology Lab. Computer Science and Engineering Department. 362 Winston Chung Hall (3rd floor). University of California, Riverside. Riverside, CA 92521. You can also check the driving and parking. Directions for the Engineering II Building at the Computer Science and Engineering web site. Algorithms and Computational Biology Lab 2015 Last modified: 2015-May-26.

3

FLAT - Flowgram Alignment Tool

http://theory.cs.ucr.edu/flat

FLAT - Flowgram Alignment Tool. This web page contains supplementary information for the paper "A probabilistic method for small RNA flowgram matching," Vladimir Vacic. Pacific Symposium on Biocomputing, PSB'08. Distributions of signal strengths for three 454 pyrosequencing datasets: A) A. thaliana. 50 million flows, small RNA discovery); B) H. sapiens. 384 million flows, small RNA discovery); C) C. bifermentans. It is of interest to observe that in the H. sapiens. Flowspace encoding of the sequence.

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cs.ucr.edu cs.ucr.edu

Marek Chrobak's Home Page

http://www.cs.ucr.edu/~marek

Department of Computer Science and Engineering. University of California, Riverside. Riverside, CA 92521. Link to personal home page. Education and Previous Appointments. 1985, PhD in Computer Science, Warsaw University. 1985-1987, Assistant Professor, Warsaw University. 1987, Visiting Assistant Professor, Columbia University. 1987-current, University of California, Riverside. Theory of computation: automata theory, complexity theory, computability. Combinatorics and graph theory. CS Department Home Page.

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OTHER SITES

theory.cs.brown.edu theory.cs.brown.edu

Home

Welcome to Theoretical Computer Science at Brown. We are proud to have a G. Del prize winner and ACM fellow (Maurice Herlihy), and three ACM and IEEE fellows (Franco Preparata, John Savage and Eli Upfal). Distributed and parallel computing. Computational biology, algorithms. Algorithms on graphs and networks. Combinatorial computing, algorithms, computational biology. Algorithms, probability and applications. Faculty members with a friendly interest in Theory. Graduated PhDs (since 2006). Advanced probab...

theory.cs.cmu.edu theory.cs.cmu.edu

Carnegie Mellon Algorithms and Complexity Group

The faculty routinely offer advanced courses on various topics in the frontier of research in theoretical computer science (there are typically 2-3 such courses every semester). We also have a very active schedule of research seminars, including a weekly theory seminar. Which is run by our graduate students): see the seminars' page. For the inter-disciplinary program in Algorithms, Combinatorics and Optimization. Machine learning, computational aspects in economics and game theory, algorithms. Algorithmi...

theory.cs.princeton.edu theory.cs.princeton.edu

Theory @ Princeton

May 1st, Maria Chudnovsky at Theory Lunch. Title: Coloring square-free perfect graphs. May 8th, Rafael Oliveira at Theory Lunch. Title: Factors of Low Individual Degree Polynomials. Zeev Dvir and Sivakanth Gopi win Best Paper at STOC 2015. Rafael Oliveira wins Best Student Paper at CCC 2015. Sanjeev Arora Elected to AAAS. Tengyu Ma Receives IBM Fellowship Award. Prof Braverman awarded Smale Prize. Subhash Khot becomes CS dept. third winner of Nevanlinna Prize. Theory of Computation at Princeton.

theory.cs.ucdavis.edu theory.cs.ucdavis.edu

UC Davis - Computer Science - Algorithms and Theory Laboratory

Algorithms and Theory Laboratory. While work in algorithms and theory can often be done under a tree as well or better than in a physical laboratory, we do. Have a physical lab where many of our graduate students live. It’s at 2235 Kemper Hall, phone 1 530 752 8819. Computational geometry, computer graphics ( pubs. Scientific computing, numerical linear algebra ( pubs. Computational biology ( pubs. Algorithms, computational biology, bioinformatics ( pubs. Computational biology ( pubs. PhD 2010, Chip) (La...

theory.cs.uchicago.edu theory.cs.uchicago.edu

Theory Group—University of Chicago Computer Science

Department of Computer Science. The University of Chicago. Other Theory Groups in Chicago. Theoretical Computer Science at the University of Chicago. The Theory group sprung up with the founding of the Department in 1983 and has thrived ever since. In the intellectual environment of the University of Chicago, a university dedicated to fundamental research in all areas, our Theory group graduated a number of outstanding doctoral students. Our faculty. As well as current. Refreshments are served before the...

theory.cs.ucr.edu theory.cs.ucr.edu

Algorithms and Computational Biology Lab

We are interested in all aspects of the design and analysis of combinatorial algorithms. Ongoing research includes:. Average-case analysis of algorithms,. We are especially interested in algorithmic problems arising in computational molecular biology, such as:. SNP's and haplotype inference,. Genome-wide analysis of structures of gene families,. DNA microarray analysis,. Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG). Is a high-throughput system for ortholog assignment on a genome scale.

theory.cs.uni-bonn.de theory.cs.uni-bonn.de

University of Bonn, CS Dept., Chair V: Homepage

Department of Computer Science. Welcome to the Homepage of Chair V. We are part of the Department of Computer Science. At the University of Bonn. Our research program is concerned with "Efficient Algorithms". Parallel and Distributed Computing". And "Combinatorial and Geometric Optimization". Members of Chair V. Special Year on Computational Complexity. Bonn Research Platform on Algorithmics. 3D Gale-Berlekamp Game (Demo). Sorting by Reversals (Demo). How to reach us. Compendium on Steiner Tree Problems.

theory.cs.uvic.ca theory.cs.uvic.ca

The Object Server Home Page (COS)

The (Combinatorial) Object Server. Thank you for visiting the combinatorial object server, otherwise known as COS. We hope that you will find it informative and useful. Who is it intended for? How does it work? COS does not store any tables of the lists that it produces. Each list is produced by a program on-the-fly. Most of the programs use a recursive backtracking, and some are available for downloading. What if I want millions of objects? We are always curious about who is using COS. Please send u...

theory.cs.yale.edu theory.cs.yale.edu

Theoretical Computer Science at Yale

Theoretical Computer Science at Yale. Appointed jointly with Applied Mathematics). Alumni (Former PhD students and postdocs, with graduation dates). Karhan Akcoglu, PhD 2003. Leonor Becerra-Bonache, Postdoc 2009. Kevin Chang, PhD 2006. Jiang Chen, PhD 2006. Samuel Daitch, PhD 2009. Ronny Dakdouk, PhD 2009. Zoe Diamadi, PhD 2004. Fernando Esponda, Postdoc 2007. Martins Krikis, PhD 1998. Philip Laird, PhD 1987. Michael Mahoney, Postdoc 2005. Ruben Michel, PhD 1990. Nathaniel Mishkin, PhD 1984. Distributed ...

theory.csc.uvic.ca theory.csc.uvic.ca

The Object Server Home Page (COS)

The (Combinatorial) Object Server. Thank you for visiting the combinatorial object server, otherwise known as COS. We hope that you will find it informative and useful. Who is it intended for? How does it work? COS does not store any tables of the lists that it produces. Each list is produced by a program on-the-fly. Most of the programs use a recursive backtracking, and some are available for downloading. What if I want millions of objects? We are always curious about who is using COS. Please send u...

theory.cse.iitm.ac.in theory.cse.iitm.ac.in

Theory Group @ CSE-IITM

Department of Computer Science and Engineering. Indian Institute of Technology Madras. ITM Convocation 2015 : PhD(4), MS(4), MTP(24), BTP(5) from the theory group. Mini-course on Foundations of Machine Learning by Aravind Srinivasan, Dec 28-30, 2014. Mini-course on Optimization by Nisheeth Vishnoi, on Dec 9, 2014. Oct 2014 : Rajsekar Manokaran joins the Department of CSE. List of upcoming speakers. Welcome to the homepage of the Theoretical Computer Science Group. Please refer to the department webpage.