toppgene.cchmc.org

Welcome to ToppGene

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. Transcriptome, ontology, phenotype, proteome, and pharmacome annotations based gene list functional enrichment analysis. Prioritize or rank candidate genes based on functional similarity to training gene list. Relative importance of candidate genes in networks. Prioritization of neighboring genes in protein-protein interaction network.

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Welcome to ToppGene | toppgene.cchmc.org Reviews

<META> DESCRIPTION

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. Transcriptome, ontology, phenotype, proteome, and pharmacome annotations based gene list functional enrichment analysis. Prioritize or rank candidate genes based on functional similarity to training gene list. Relative importance of candidate genes in networks. Prioritization of neighboring genes in protein-protein interaction network.

<META> KEYWORDS

1 toppgene suite

2 links

3 database details

4 supplementary

5 publications

6 terms of use

7 contacts

8 supported by

9 toppfun

10 toppgene

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Welcome to ToppGene | toppgene.cchmc.org Reviews

https://toppgene.cchmc.org

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. Transcriptome, ontology, phenotype, proteome, and pharmacome annotations based gene list functional enrichment analysis. Prioritize or rank candidate genes based on functional similarity to training gene list. Relative importance of candidate genes in networks. Prioritization of neighboring genes in protein-protein interaction network.

INTERNAL PAGES

toppgene.cchmc.org

1

ToppGene - Gene Priortization

https://toppgene.cchmc.org/prioritization.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. ToppGene: Candidate gene prioritization. Select your gene identifier type, paste your training and test gene sets below or select example sets, then submit. Click on "HGNC Symbol" or "Entrez ID" to use the example training and test set of genes). HGNC Symbol and Synonyms. HGNC Symbol and Synonyms. 2007-2016 Cincinnati Children's Hospital Medical Center.

2

ToppFun - Functional Enrichment

https://toppgene.cchmc.org/enrichment.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. ToppFun: Transcriptome, ontology, phenotype, proteome, and pharmacome annotations based gene list functional enrichment analysis. Select your gene identifier type, paste your sets below or select example set, then submit. HGNC Symbol and Synonyms. Click on "HGNC Symbol" or "Entrez ID" to use the example training and test set of genes).

3

ToppGenet - Neighboring Genes in Protein-Protein Network

https://toppgene.cchmc.org/network_prioritization.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. ToppGenet: Prioritization of neighboring genes in Protein-Protein Interaction Network. Select your gene identifier type, paste your sets below or select example set, then submit. HGNC Symbol and Synonyms. Click on "HGNC Symbol" or "Entrez ID" to use the example "seeds"). 2007-2016 Cincinnati Children's Hospital Medical Center.

4

Database Information

https://toppgene.cchmc.org/navigation/database.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. Updated Jul 18, 2016. Updated Jul 18, 2016. Updated Jul 18, 2016. Updated Sep 8, 2015. BioSystems: Pathway Interaction Database. MSigDB C2 BIOCARTA (v5.1). Feb 24, 2015. Updated Jul 18, 2016. Updated Jul 18, 2016. MSigDB C2: CGP Curated Gene Sets (v5.1). MSigDB C6: Oncogenic Signatures (v5.1). MSigDB C7: Immunologic Signatures (v5.1). Oct 9, 2014.

5

Links

https://toppgene.cchmc.org/navigation/links.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. ToppGene Suite would not be possible without the efforts and contributions to the scientific community of the following institutions. A database for gene annotations. European Molecular Biology Laboratory. The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism. GWAS Central (previously the ...

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gudmap.org

GUDMAP > Disease

http://www.gudmap.org/gudmap_dis/index.jsp

UQ GUDMAP - Probe Design. About GUDMAP Disease Resource. The GATACA GUDMAP Gene Explorer. At Cincinnati Children's Hospital Medical Center. A tool for the identification and analysis of genes responsible for functions and diseases of the genitourinary system. At Cincinnati Children's Hospital Medical Center. A one-stop portal for gene list enrichment analysis and candidate gene prioritization based on functional annotations and protein interaction networks.

en.wikipedia.org

Bioinformatics - Wikipedia, the free encyclopedia

https://en.wikipedia.org/wiki/Bioinformatics

From Wikipedia, the free encyclopedia. For the journal, see Bioinformatics (journal). Map of the human X chromosome. From the National Center for Biotechnology Information. Part of a series on. Diagrammatic representation of the divergence. Of modern taxonomic groups. From their common ancestor. Evidence of common descent. History of evolutionary theory. Evolution as fact and theory. Part of a series. Field that develops methods and software tools. Data As an interdisciplinary. Relation to other fields.

anil.cchmc.org

List of Projects | Anil Jegga

https://anil.cchmc.org/projects

To achieve my research goals, I use genomics (functional and comparative) and computational biology tools (bioinformatic approaches). Here's a list of our efforts - including past and current, and also those in pipeline. In-house developed and published online databases and servers. Http:/ trafac.cchmc.org. Http:/ info.cchmc.org/help/trafac/index.html. Jegga et al., 2002. Citing articles via Google Scholar. Http:/ cismols.cchmc.org. Http:/ info.cchmc.org/help/cismols/index.html. Jegga et al., 2005. Web-a...

human-phenotype-ontology.github.io

Users | Human Phenotype Ontology

http://human-phenotype-ontology.github.io/people.html

The users of HPO. NIH Undiagnosed disease program (UDP). Mouse Genome Informatics (MGI). International Rare Diseases Research Consortium (IRDiRC). International Collaboration for Clinical Genomics (ICCG). NCBI Genetic Testing Registry. MORPHIN (Model Organisms Projected on a Human Integrated Gene Network). Superfamily Structural classification of protein. GEPADO Software Solutions for Genetics - GmbH. Selected papers that use HPO. Köhler, Sebastian, et al. Clinical interpretation of CNVs with cross-s...

little.imb.uq.edu.au

Little Group - Institute for Molecular Bioscience

http://little.imb.uq.edu.au/links.php

Institute for Molecular Bioscience (IMB). The Institute for Molecular Bioscience is an outstanding research institute located at The University of Queensland, in Brisbane, Australia. The IMB's mission is to decipher the information contained in the genes, proteins and molecules of humans, animals and plants. Http:/ www.imb.uq.edu.au/index.html. Http:/ www.imb.uq.edu.au/index.html? GUDMAP (Genitourinary Development Molecular Anatomy Project). Http:/ www.gudmap.org. MGI (Mouse Genome Informatics). MGI is t...

emeslab.wordpress.com

Useful links – UoN Bioinformatics

https://emeslab.wordpress.com/useful-links

Bioinformatics Group University of Nottingham. Leave a Reply Cancel reply. Enter your comment here. Fill in your details below or click an icon to log in:. Address never made public). You are commenting using your WordPress.com account. ( Log Out. You are commenting using your Twitter account. ( Log Out. You are commenting using your Facebook account. ( Log Out. You are commenting using your Google account. ( Log Out. Notify me of new comments via email. New Assistant Prof Tania Dottorini.

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toppgene.cchmc.org

Welcome to ToppGene

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. Transcriptome, ontology, phenotype, proteome, and pharmacome annotations based gene list functional enrichment analysis. Prioritize or rank candidate genes based on functional similarity to training gene list. Relative importance of candidate genes in networks. Prioritization of neighboring genes in protein-protein interaction network.

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