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An open-source R framework for your microarray analysis | aroma-project.org

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...

http://v1.aroma-project.org/

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An open-source R framework for your microarray analysis | aroma-project.org | v1.aroma-project.org Reviews
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Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...
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An open-source R framework for your microarray analysis | aroma-project.org | v1.aroma-project.org Reviews

https://v1.aroma-project.org

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...

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v1.aroma-project.org v1.aroma-project.org
1

Demos | aroma-project.org

http://v1.aroma-project.org/demos

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. Spatial images of raw probe (sqrt) intensities using a black-to-yellow color map. Spatial images of (log2) RMA residuals using a rainbow color map. Negative and positive residuals are displayed separately. Total (log2) copy-number ratios along the genome chromosome by chromosome. Total (log2) copy-number ratios along the genome chromosome by chromosome.

2

Install | aroma-project.org

http://v1.aroma-project.org/install

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. The aroma.affymetrix package. To install or update aroma.affymetrix and all required and recommended packages, start R and do:. Source('http:/ callr.org/install#aroma.affymetrix'). That's it. (You can install any CRAN and Bioconductor package using this approach). Aroma - Are you looking for the original aroma package that processes spotted microarrays? Then please see its installation. Operating system: Linux, OSX, Windows, . (any that runs R).

3

Developers' Corner | aroma-project.org

http://v1.aroma-project.org/developers

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. CONTRIBUTIONS NEEDED: This page is under development. Please consider contributing to it. So, if you're a developer that plan to contribute to the Aroma project, please consider the below documents. The aroma coding style. Henrik Bengtsson, The Aroma R Coding Conventions (Aroma RCC). Dept of Statistics, University of California, Berkeley, 2009. Henrik Bengtsson, R Coding Conventions (RCC) - a draft, Version 0.9. Examples "./incl/foo.R". Cf javadoc for ...

4

Frequently Asked Questions | aroma-project.org

http://v1.aroma-project.org/FAQ

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. FAQ 2010-06-29: Why do so few methods have a help() page? A: The main source of documentation for the aroma framework, is the http:/ www.aroma-project.org/. To the online as well as help-page documentation. FAQ 2008-03-26: Why do you not want to answer questions sent to your private email address? A: Please post all questions related to aroma.affymetrix to the aroma-affymetrix@googlegroups.com. FAQ 2007-07-13: Hmm. why does R crash (core dump)? A: The ...

5

An open-source R framework for your microarray analysis | aroma-project.org

http://v1.aroma-project.org/.

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...

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An open-source R framework for your microarray analysis | aroma-project.org

Aromaaffymetrix 2.12.0. Aromacn 1.5.0. PSCBS 0.43.0. June 8, 2014: PSCBS 0.43.0 released. March 9, 2014: aroma.affymetrix 2.12.0 released. Feb 4, 2014: PSCBS 0.40.4 released. Oct 18, 2013: aroma.affymetrix 2.11.1 released. Oct 17, 2013: aroma.cn 1.5.0 released. An open-source R framework for your microarray analysis. Number of arrays: unlimited. System requirements: As low as 1GB RAM, any operating system. Chip types: all Affymetrix. Immediate support for custom CDFs. Paired and non-paired copy-number an...

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