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Home : EMDataBank

EMDB map entries, 1411 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Remediation of 3DEM Entries in the Protein Data Bank. The wwPDB and the EMDataBank/Unified Data Resource for 3DEM Project. Map Challenge Assessment Phase is Now Open. Unified Data Resource for 3-Dimensional Electron Microscopy. For up-to-date information about map and model challenges, visit challenges.emdatabank.org. National Institutes of Health.

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EMDB map entries, 1411 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Remediation of 3DEM Entries in the Protein Data Bank. The wwPDB and the EMDataBank/Unified Data Resource for 3DEM Project. Map Challenge Assessment Phase is Now Open. Unified Data Resource for 3-Dimensional Electron Microscopy. For up-to-date information about map and model challenges, visit challenges.emdatabank.org. National Institutes of Health.
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Home : EMDataBank | www-ebi.emdatabank.org Reviews

https://www-ebi.emdatabank.org

EMDB map entries, 1411 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Remediation of 3DEM Entries in the Protein Data Bank. The wwPDB and the EMDataBank/Unified Data Resource for 3DEM Project. Map Challenge Assessment Phase is Now Open. Unified Data Resource for 3-Dimensional Electron Microscopy. For up-to-date information about map and model challenges, visit challenges.emdatabank.org. National Institutes of Health.

INTERNAL PAGES

www-ebi.emdatabank.org www-ebi.emdatabank.org
1

2016 Remediation of 3DEM Entries

http://www-ebi.emdatabank.org/remediation_3dem.html

EMDB map entries, 1484 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. 2016 Remediation of 3DEM Entries. The wwPDB and the EMDataBank/Unified Data Resource for 3DEM Project. The OneDep System has supported deposition, annotation, and validation of 3DEM structures and fully integrates deposition of 3DEM maps and model coordinates since January 2016. A data-item level description of the changes made during remediation is provided here.

2

Dictionaries : EMDataBank

http://www-ebi.emdatabank.org/dictionaries.html

EMDB map entries, 1484 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Current Dictionaries and File Formats. These dictionaries and formats are currently used for deposition and archiving of 3DEM maps and models. EMDB v.1.9 header xml schema for maps and 3DEM experiment metadata. Fourier Shell Correlation (FSC) xml schema. WwPDB dictionary V4 (mmCIF/PDBx) for model coordinates and 3DEM experiment metadata. National Institutes of Health.

3

EM Software : EMDataBank

http://www-ebi.emdatabank.org/emsoftware.html

EMDB map entries, 1484 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Listed below are software programs used in the generation, analysis, and fitting of 3D maps from electron microscopy images. The starting point for the list was the EM software wiki page. Please send corrections/additions to help@emdatabank.org. Click on the Program. Table headers to change the sort order. Http:/ www.ual.es/ jjfdez/SW/embfactor.html. Http:/ blake.bcm.edu/EMAN/. Script...

4

EM Data Bank Access : EMDataBank

http://www-ebi.emdatabank.org/emdbaccess.html

EMDB map entries, 1484 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. EM Data Bank access. Ftp: The EMDB is distributed by the wwPDB and EMDataBank partners, at the following sites. UK: ftp:/ ftp.ebi.ac.uk/pub/databases/emdb. USA: ftp:/ ftp.wwpdb.org/pub/emdb. Japan: ftp:/ ftp.pdbj.org/pub/emdb/. See http:/ www.wwpdb.org/downloads.html. For EMDB download information. National Institutes of Health. National Institute of General Medical Sciences.

5

FAQ : EMDataBank

http://www-ebi.emdatabank.org/faq.html

EMDB map entries, 1474 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. EM map deposition questions. How do I begin a map deposition to EMDB? What map formats are accepted by EMDB? What is the difference between a deposition session id and an EMDB accession id? We have two maps for one submitted manuscript, one native, one with cofactor protein. Do we need to complete two separate depositions? EM map-derived coordinate model deposition questions. My fitte...

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Home : EMDataBank

EMDB map entries, 1411 PDB coordinate entries PDBe. One-stop shop for 3DEM deposition and retrieval. EM Data Bank Access. Remediation of 3DEM Entries in the Protein Data Bank. The wwPDB and the EMDataBank/Unified Data Resource for 3DEM Project. Map Challenge Assessment Phase is Now Open. Unified Data Resource for 3-Dimensional Electron Microscopy. For up-to-date information about map and model challenges, visit challenges.emdatabank.org. National Institutes of Health.

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