phantomdb.ucsd.edu
The PHANTOM databaseThe Biology Division at University of California, San Diego.
http://phantomdb.ucsd.edu/
The Biology Division at University of California, San Diego.
http://phantomdb.ucsd.edu/
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The PHANTOM database | phantomdb.ucsd.edu Reviews
https://phantomdb.ucsd.edu
The Biology Division at University of California, San Diego.
phantomdb.ucsd.edu
Documentation for PHANTOM database version 1.5
http://phantomdb.ucsd.edu/help
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. Documentation for PHANTOM database version 1.5. What can you do in PHANTOMDB? Searching and Analysing Gene Families. Search in Gene Family Definition. Analyse expression, alignments and protein domains. Sequence alignment and phylogenetic tree. Search on the amiRNA Search page. AmiRNA sequences, primers, PCR sequence and plasmid map. Definition of terms used. What can you do in PHANTOMDB? Entry ...
The PHANTOM database
http://phantomdb.ucsd.edu/wizard
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. Step one: Choose search area of interest. Search for amiRNAs targeting multiple genes. Search for families containing your gene(s). Search for existing amiRNAs in different collections. The currently available analysis possibilities are summarized in the graph below (hover over the image for more information - click to go to the pages):. Entry point for searches with one gene. Here you can searc...
The PHANTOM database
http://phantomdb.ucsd.edu/geneportal
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. The Gene Search Portal allows you to search with one gene identifier such as a TAIR. Identifier for locus (AT2G45190) or gene model (AT2G45190.1) or alternatively a UniProt. Family definitions included in TAIR8. PP2C and PPP type phosphatases. PlnTFDB (Transcriptionfactors v3.0). Family definitions included in TAIR7. Biology Division of UCSD.
The PHANTOM database
http://phantomdb.ucsd.edu/portalmulti
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. The amiRNA Search portal allows you to search with multiple gene identifiers such as TAIR. Locus identifiers (AT2G45190) or alternatively UniProt. Identifiers (A8MQY6) in a set of amiRNAs targeting families for your amiRNA of interest (see table below). Reduce set of amiRNAs:. Minimal number of amiRNA targets:. Maximal number of amiRNA targets:. Name of Family Definition. Biology Division of UCSD.
The PHANTOM database
http://phantomdb.ucsd.edu/familyportal
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. The Family Search portal allows you to search the database without knowing family members. Depending on your choice you can either get additional information on expression levels, domain organisation, alignments and more (Metadata) or a detailed subcluster analysis.The required input are family identifiers such as C2C2-GATA. If you do not know the family identifier use the gene portal.
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The PHANTOM database
A resource provided by the laboratory of Julian I. Schroeder (UCSD), created by Felix Hauser and Wenxiao Chen. The PHANTOM database - A database of Family targeting Artificial Micro RNAs. Biology Division of UCSD.
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