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NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

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NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

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1 ridom seqsphere

2 ridom staphtype

3 news

4 ridom home

5 legionella pneumophilia

6 l pneumophilia

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8 imprint

9 coupons

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Ridom Home | ridom.de Reviews

https://ridom.de

NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

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www3.ridom.de

Ridom Home

NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

spaserver2.ridom.de

Ridom SpaServer

Conceptualized and implemented by Ridom GmbH. Sequence data curated by SeqNet.org. Is a major human pathogen causing skin and tissue infections, pneumonia, septicemia, and device-associated infections. The emergence of strains resistant to methicillin (MRSA) and other antibacterial agents has become a major concern, especially in the hospital environment, because of the high mortality of the infections caused by these strains. Single locus DNA-sequencing of the repeat region of the.

spaserver.ridom.de

Ridom SpaServer

Conceptualized and implemented by Ridom GmbH. Sequence data curated by SeqNet.org. Is a major human pathogen causing skin and tissue infections, pneumonia, septicemia, and device-associated infections. The emergence of strains resistant to methicillin (MRSA) and other antibacterial agents has become a major concern, especially in the hospital environment, because of the high mortality of the infections caused by these strains. Single locus DNA-sequencing of the repeat region of the.

spa.ridom.de

Ridom SpaServer

Conceptualized and implemented by Ridom GmbH. Sequence data curated by SeqNet.org. Is a major human pathogen causing skin and tissue infections, pneumonia, septicemia, and device-associated infections. The emergence of strains resistant to methicillin (MRSA) and other antibacterial agents has become a major concern, especially in the hospital environment, because of the high mortality of the infections caused by these strains. Single locus DNA-sequencing of the repeat region of the.

INTERNAL PAGES

ridom.de

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Ridom GmbH Imprint

http://www.ridom.de/imprint.shtml

D-48149 Münster, Germany. 49 (251) 490 931 50. 49 (251) 490 931 51. Managing Director / Geschäftsführer. Prof Dr. Dag Harmsen. Jörg Rothgänger. Registered Office / Sitz:. Register Court / Amtsgericht:. Münster (HRB 12982). VAT-ID / USt-IdNr.:. Tax-No. / Steuer-Nr.:. Ridom Terms and Condition of Business. Ridom End User License Agreement for Software (EULA).

2

Ridom Company

http://www.ridom.de/company

Ridom has revolutionized sequence based genotyping efforts with its StaphType. Software for MRSA. The tool delivered for the first time ever an automated quality-controlled curation of a global and public nomenclature. In the meantime the accompanying Ridom SpaServer. Web application for molecular typing of. In 2013 the Ridom SeqSphere.

3

Ridom News

http://www.ridom.de/news

Meningococcal disease: identification of a sexually transmitted variant. A study elucidates the mechanisms of the emergence of an outbreak of meningococcal disease in men who have sex with men (MSM). SeqSphere Version 3.1 released that is freely available to customers. SeqSphere version 3.0 released that is freely available to customers with GIS and epi-curve functionality and SRA interface. Most important we have now implemented geographical information system. Novel core-genome MLST typing scheme for.

4

Ridom SeqSphere+ - Overview

http://www.ridom.de/seqsphere

Microbial genomics software for outbreak-, resistome-, virulome-investigation, and real-time surveillance. No scripting or bioinformatics skills required. Ridom SeqSphere includes every tool that is needed to do bacterial typing with whole genome shotgun (WGS) data. The software works directly with the short-read FASTQ files produced by a NGS sequencer. A pipeline mode allows to import, assemble and analyze hundreds of read files without any user intervention. Now, microbiologists everywhere can experien...

5

Ridom SeqSphere+ cgMLST

http://www.ridom.de/seqsphere/mlstplus

CgMLST - Genome-wide gene by gene microbial typing. MLST of 6 genes versus genome-wide cgMLST. Shown are the six. MLST loci and red dots across the genome that represent symbolically the cgMLST loci. Suppl 3] 1, 2007 [ PubMed. With fast and affordable microbial whole genome shotgun next generation sequencing and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes (core genome MLST, cgMLST. For typing ( Fig. 1. Nomenclature Server) The heightened discrimination p...

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cgmlst.org

Listeria monocytogenes cgMLST

http://www.cgmlst.org/ncs/schema/690488

EGD-e (NC 003210.1, 17-DEC-2014). Mar 9, 2017 6:02 AM. A Pietzka, AGES Graz, Austria. Ruppitsch, W, Pietzka, A, Prior, K, Bletz, S, Fernandez, HL, Allerberger, F, Harmsen, D, and Mellmann, A. Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes. J Clin. Microbiol. Implemented and maintained by Ridom.

cgmlst.org

Legionella pneumophila cgMLST

http://www.cgmlst.org/ncs/schema/1025099

Philadelphia 1 (NC 002942.5, 27-JUN-2013). Mar 10, 2017 5:55 PM. J Moran-Gilad, Public Health Services, Jerusalem, Israel. C Lück, Inst. of Medical Microbiology and Hygiene, TU, Dresden, Germany. T Harrison, Reference Microbiology Services, PHE, London, United Kingdom. Moran-Gilad, J, Prior, K, Yakunin, E, Harrison, TG, Underwood, A, Lazarovitch, T, Valinsky, L, Luck, C, Krux, F, Agmon, V, Grotto, I, and Harmsen, D. Implemented and maintained by Ridom.

cgmlst.org

Klebsiella pneumoniae/variicola/quasipneumoniae cgMLST

http://www.cgmlst.org/ncs/schema/2187931

K pneumoniae sensu lato cgMLST. NTUH-K2044 (NC 012731.1, 15-JUN-2016). Mar 10, 2017 2:20 AM. J Rossen, Department of Medical Microbiology, University of Groningen, the Netherlands. D Harmsen, University Münster, Germany. Implemented and maintained by Ridom.

cgmlst.org

Francisella tularensis cgMLST

http://www.cgmlst.org/ncs/schema/260204

LVS (NC 007880.1, 10-JUN-2013). Sep 1, 2016 8:05 AM. M Antwerpen, Institut für Mikrobiologie der Bundeswehr, München, Germany. Antwerpen, MH, Prior, K, Mellmann, A, Höppner, S, Splettstoesser, WD, and Harmsen, D. Rapid high resolution genotyping of Francisella tularensis by whole genome sequence comparison of annotated genes ("MLST "). Implemented and maintained by Ridom.

cgmlst.org

Enterococcus faecium cgMLST

http://www.cgmlst.org/ncs/schema/991893

Aus0004 (NC 017022.1, 06-JUL-2013). Mar 9, 2017 3:36 PM. R Willems, University Medical Center Utrecht, the Netherlands. J Top, University Medical Center Utrecht, the Netherlands. H Westh, Hvidovre Hospital, Denmark. De Been, M, Pinholt, M, Top, J, Bletz, S, Mellmann, A, van Schaik, W, Brouwer, E, Rogers, M, Kraat, Y, Bonten, M, Corander, J, Westh, H, Harmsen, D, and Willems, RJ. Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium. J Clin. Microbiol.

cgmlst.org

Staphylococcus aureus cgMLST

http://www.cgmlst.org/ncs/schema/141106

COL (NC 002951.2, 10-JUN-2013). Mar 9, 2017 3:59 PM. A Mellmann, Inst. Hygiene, University Münster, Münster, Germany. D Harmsen, University Münster, Germany. Leopold, SR, Goering, RV, Witten, A, Harmsen, D, and Mellmann, A. Bacterial whole-genome sequencing revisited: portable, scalable, and standardized analysis for typing and detection of virulence and antibiotic resistance genes. J Clin. Microbiol. Implemented and maintained by Ridom.

cgmlst.org

Mycobacterium tuberculosis complex cgMLST

http://www.cgmlst.org/ncs/schema/741110

Mycobacterium tuberculosis complex cgMLST. Mycobacterium tuberculosis complex cgMLST. M tuberculosis complex cgMLST. H37Rv (NC 000962.3, 22-DEC-2014). Mar 10, 2017 1:58 PM. S Niemann, Research Center Borstel, Borstel, Germany. Kohl, TA, Diel, R, Harmsen, D, Rothgänger, J, Walter, KM, Merker, M, Weniger, T, and Niemann, S. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin. Microbiol. Mycobacterium tuberculosis complex Accessory.

spa.ridom.de

SpaServer Imprint

http://spa.ridom.de/imprint.shtml

Mendelstr. 11 D-48149 Münster, Germany Geschäftsführer / Managing Director Prof. Dr. Dag Harmsen Jörg Rothgänger Sitz / Registered Office: Münster Amtsgericht / Register Court: Münster (HRB 12982) Steuer-Nr. / Tax-No. : 336/5725/3923.

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RIDOLUX - We hide the sun!

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Ridom Home

NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

ridom.de

Ridom Home

NGS microbial typing solution for any bacteria, any study type, any lab. Combining the best - Comparability of MLST and discriminatory power of PFGE. Microbiologists everywhere can experience the genomic revolution that benchtop next generation sequencing (NGS; e.g., Illumina, Ion Torrent or Roche/454) provides. With fast and affordable microbial whole genome shotgun NGS and automatized software analysis, microbiologists can use genome-wide hundreds/thousands of genes ( MLST /cgMLST.

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